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  5. Sam_g13458

Sam_g13458


Description : UDP-L-rhamnose synthase *(RHM) & original description: none


Gene families : OG0000903 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000903_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g13458
Cluster HCCA: Cluster_58

Target Alias Description ECC score Gene Family Method Actions
AT3G14790 ATRHM3, RHM3 rhamnose biosynthesis 3 0.03 OrthoFinder output from all 47 species
Aspi01Gene44993.t1 RHM1, ROL1,... UDP-L-rhamnose synthase *(RHM) & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0040.g026675 RHM1, ROL1, ATRHM1 UDP-L-rhamnose synthase *(RHM) & original description:... 0.04 OrthoFinder output from all 47 species
Cba_g25968 RHM1, ROL1, ATRHM1 UDP-L-rhamnose synthase *(RHM) & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.15G004900.1 ATRHM2, RHM2,... UDP-L-rhamnose synthase *(RHM) & original description:... 0.02 OrthoFinder output from all 47 species
Cre09.g387171 NRS/ER, UER1 Carbohydrate metabolism.nucleotide sugar... 0.02 OrthoFinder output from all 47 species
Gb_18288 RHM1, ROL1, ATRHM1 UDP-L-rhamnose synthase 0.03 OrthoFinder output from all 47 species
MA_217856g0010 NRS/ER, UER1 UDP-L-rhamnose synthase 0.03 OrthoFinder output from all 47 species
Mp1g04880.1 NRS/ER, UER1 UDP-L-rhamnose synthase 0.04 OrthoFinder output from all 47 species
Pp3c6_15300V3.1 NRS/ER, UER1, Pp3c6_15300 nucleotide-rhamnose synthase/epimerase-reductase 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0011.g005330 RHM1, ROL1, ATRHM1 UDP-L-rhamnose synthase *(RHM) & original description:... 0.03 OrthoFinder output from all 47 species
Solyc07g062130.3.1 RHM1, ROL1,... UDP-L-rhamnose synthase 0.03 OrthoFinder output from all 47 species
Solyc08g080140.4.1 NRS/ER, UER1,... UDP-L-rhamnose synthase 0.03 OrthoFinder output from all 47 species
Spa_g24187 RHM1, ROL1, ATRHM1 UDP-L-rhamnose synthase *(RHM) & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e015435_P001 NRS/ER, UER1,... UDP-L-rhamnose synthase 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004180 carboxypeptidase activity IEP HCCA
MF GO:0004185 serine-type carboxypeptidase activity IEP HCCA
BP GO:0006629 lipid metabolic process IEP HCCA
BP GO:0006644 phospholipid metabolic process IEP HCCA
BP GO:0006650 glycerophospholipid metabolic process IEP HCCA
BP GO:0006793 phosphorus metabolic process IEP HCCA
BP GO:0006796 phosphate-containing compound metabolic process IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008236 serine-type peptidase activity IEP HCCA
MF GO:0008238 exopeptidase activity IEP HCCA
MF GO:0016301 kinase activity IEP HCCA
MF GO:0016307 phosphatidylinositol phosphate kinase activity IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0017171 serine hydrolase activity IEP HCCA
BP GO:0019637 organophosphate metabolic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044255 cellular lipid metabolic process IEP HCCA
BP GO:0046486 glycerolipid metabolic process IEP HCCA
BP GO:0046488 phosphatidylinositol metabolic process IEP HCCA
MF GO:0070008 serine-type exopeptidase activity IEP HCCA
MF GO:0070569 uridylyltransferase activity IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR016040 NAD(P)-bd_dom 12 317
IPR001509 Epimerase_deHydtase 395 558
No external refs found!