Sam_g13371

Description : transcription factor *(A/B-GATA) & original description: none

Gene families : OG0000100 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000100_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Sam_g13371

Target	Alias	Description	ECC score	Gene Family Method
AT3G50870	HAN, MNP, GATA18	GATA type zinc finger transcription factor family protein	0.02	OrthoFinder output from all 47 species
AT5G49300	GATA16	GATA transcription factor 16	0.02	OrthoFinder output from all 47 species
Adi_g043911	GATA22, CGA1, GNL	transcription factor *(A/B-GATA) & original description: none	0.03	OrthoFinder output from all 47 species
Adi_g050803	GATA9	transcription factor *(A/B-GATA) & original description: none	0.02	OrthoFinder output from all 47 species
Adi_g057963	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Adi_g057964	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Adi_g098746	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Adi_g107250	GATA9	transcription factor *(A/B-GATA) & original description: none	0.03	OrthoFinder output from all 47 species
Aev_g17574	GATA9	transcription factor *(A/B-GATA) & original description: none	0.03	OrthoFinder output from all 47 species
Als_g00831	GATA9	transcription factor *(A/B-GATA) & original description: none	0.03	OrthoFinder output from all 47 species
Als_g48787	GATA12	transcription factor *(A/B-GATA) & original description: none	0.02	OrthoFinder output from all 47 species
Aob_g02172	GNC, GATA21	transcription factor *(A/B-GATA) & original description: none	0.02	OrthoFinder output from all 47 species
Aop_g12583	GATA9	transcription factor *(A/B-GATA) & original description: none	0.02	OrthoFinder output from all 47 species
Azfi_s0002.g001627	GATA19	transcription factor *(A/B-GATA) & original description:...	0.01	OrthoFinder output from all 47 species
Cba_g04557	GATA9	transcription factor *(A/B-GATA) & original description: none	0.03	OrthoFinder output from all 47 species
Cba_g05826	GATA9	transcription factor *(A/B-GATA) & original description: none	0.03	OrthoFinder output from all 47 species
Ceric.33G007300.1	GATA15, Ceric.33G007300	transcription factor *(A/B-GATA) & original description:...	0.02	OrthoFinder output from all 47 species
Dac_g07483	GNC, GATA21	transcription factor *(A/B-GATA) & original description: none	0.02	OrthoFinder output from all 47 species
Ehy_g08339	GATA12	transcription factor *(A/B-GATA) & original description: none	0.02	OrthoFinder output from all 47 species
Ehy_g26857	GATA12	transcription factor *(A/B-GATA) & original description: none	0.02	OrthoFinder output from all 47 species
Ehy_g27336	GATA1	transcription factor *(A/B-GATA) & original description: none	0.02	OrthoFinder output from all 47 species
GSVIVT01018951001	HAN, MNP, GATA18	RNA biosynthesis.transcriptional activation.C2C2...	0.02	OrthoFinder output from all 47 species
GSVIVT01033385001	GATA9	RNA biosynthesis.transcriptional activation.C2C2...	0.03	OrthoFinder output from all 47 species
LOC_Os01g74540.1	GATA16, LOC_Os01g74540	transcription factor (GATA)	0.02	OrthoFinder output from all 47 species
Lfl_g24462	GATA12	transcription factor *(A/B-GATA) & original description: none	0.02	OrthoFinder output from all 47 species
MA_18616g0010	GATA9	transcription factor (GATA)	0.03	OrthoFinder output from all 47 species
Msp_g06252	GATA12	transcription factor *(A/B-GATA) & original description: none	0.03	OrthoFinder output from all 47 species
Msp_g10622	GATA9	transcription factor *(A/B-GATA) & original description: none	0.02	OrthoFinder output from all 47 species
Nbi_g22942	GATA9	transcription factor *(A/B-GATA) & original description: none	0.02	OrthoFinder output from all 47 species
Ore_g40724	GATA9	transcription factor *(A/B-GATA) & original description: none	0.02	OrthoFinder output from all 47 species
Pir_g14533	GATA9	transcription factor *(A/B-GATA) & original description: none	0.03	OrthoFinder output from all 47 species
Pir_g44692	GATA5	transcription factor *(A/B-GATA) & original description: none	0.02	OrthoFinder output from all 47 species
Ppi_g02097	GATA9	transcription factor *(A/B-GATA) & original description: none	0.02	OrthoFinder output from all 47 species
Ppi_g06282	GATA5	transcription factor *(A/B-GATA) & original description: none	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0211.g025929	GATA22, CGA1, GNL	transcription factor *(A/B-GATA) & original description:...	0.03	OrthoFinder output from all 47 species
Solyc05g056120.3.1	BME3-ZF, BME3,...	transcription factor (GATA)	0.02	OrthoFinder output from all 47 species
Spa_g45626	GATA12	transcription factor *(A/B-GATA) & original description: none	0.03	OrthoFinder output from all 47 species
Tin_g11799	GATA9	transcription factor *(A/B-GATA) & original description: none	0.03	OrthoFinder output from all 47 species
Tin_g43678	GATA12	transcription factor *(A/B-GATA) & original description: none	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	None	Extended
MF	GO:0005488	binding	None	Extended
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
MF	GO:0043565	sequence-specific DNA binding	IEA	Interproscan
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004386	helicase activity	IEP	HCCA
CC	GO:0005634	nucleus	IEP	HCCA
BP	GO:0006259	DNA metabolic process	IEP	HCCA
BP	GO:0006260	DNA replication	IEP	HCCA
CC	GO:0042575	DNA polymerase complex	IEP	HCCA
CC	GO:0043625	delta DNA polymerase complex	IEP	HCCA
CC	GO:0061695	transferase complex, transferring phosphorus-containing groups	IEP	HCCA
CC	GO:0140513	nuclear protein-containing complex	IEP	HCCA
CC	GO:0140535	intracellular protein-containing complex	IEP	HCCA
CC	GO:1990234	transferase complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000679	Znf_GATA	271	304

External Links

No external refs found!

Sam_g13371

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation