Sam_g13131

Description : component *(uL4) of large ribosomal-subunit (LSU) proteome & original description: none

Gene families : OG0002398 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002398_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Sam_g13131

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00023p00210590	evm_27.TU.AmTr_v1...	Protein biosynthesis.cytosolic ribosome.large subunit...	0.02	OrthoFinder output from all 47 species
AMTR_s00105p00023120	evm_27.TU.AmTr_v1...	Protein biosynthesis.cytosolic ribosome.large subunit...	0.02	OrthoFinder output from all 47 species
AT3G09630	No alias	Ribosomal protein L4/L1 family	0.03	OrthoFinder output from all 47 species
AT5G02870	No alias	Ribosomal protein L4/L1 family	0.04	OrthoFinder output from all 47 species
Aev_g07158	No alias	component *(uL4) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Als_g12096	No alias	component *(uL4) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Aob_g11621	No alias	component *(uL4) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Aop_g12528	No alias	component *(uL4) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Azfi_s0312.g064197	No alias	component *(uL4) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Ceric.07G041200.1	Ceric.07G041200	component *(uL4) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Ceric.18G033500.1	Ceric.18G033500	component *(uL4) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00022075.53	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.02	OrthoFinder output from all 47 species
Cre09.g397697	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.02	OrthoFinder output from all 47 species
Dac_g17142	No alias	component *(uL4) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Dcu_g06226	No alias	component *(uL4) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Ehy_g05732	No alias	component *(uL4) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
GSVIVT01025547001	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.03	OrthoFinder output from all 47 species
Gb_21884	No alias	component RPL4 of LSU proteome component	0.03	OrthoFinder output from all 47 species
Gb_21885	No alias	component RPL4 of LSU proteome component	0.03	OrthoFinder output from all 47 species
LOC_Os03g58204.1	LOC_Os03g58204	component RPL4 of LSU proteome component	0.03	OrthoFinder output from all 47 species
LOC_Os07g08330.1	LOC_Os07g08330	component RPL4 of LSU proteome component	0.02	OrthoFinder output from all 47 species
Len_g18811	No alias	component *(uL4) of large ribosomal-subunit (LSU)...	0.01	OrthoFinder output from all 47 species
Lfl_g29160	No alias	component *(uL4) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
MA_9991417g0010	No alias	component RPL4 of LSU proteome component	0.04	OrthoFinder output from all 47 species
Mp4g20310.1	No alias	component RPL4 of LSU proteome component	0.02	OrthoFinder output from all 47 species
Msp_g01521	No alias	component *(uL4) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Ore_g24610	No alias	component *(uL4) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Ore_g38027	No alias	component *(uL4) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Solyc09g007250.4.1	Solyc09g007250	component RPL4 of LSU proteome component	0.03	OrthoFinder output from all 47 species
Solyc10g084350.2.1	Solyc10g084350	component RPL4 of LSU proteome component	0.03	OrthoFinder output from all 47 species
Solyc10g086010.2.1	Solyc10g086010	component RPL4 of LSU proteome component	0.06	OrthoFinder output from all 47 species
Zm00001e005988_P001	Zm00001e005988	component RPL4 of LSU proteome component	0.02	OrthoFinder output from all 47 species
Zm00001e011456_P002	Zm00001e011456	component RPL4 of LSU proteome component	0.03	OrthoFinder output from all 47 species
Zm00001e032938_P001	Zm00001e032938	component RPL4 of LSU proteome component	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000731	DNA synthesis involved in DNA repair	IEP	HCCA
BP	GO:0001522	pseudouridine synthesis	IEP	HCCA
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003723	RNA binding	IEP	HCCA
CC	GO:0005643	nuclear pore	IEP	HCCA
CC	GO:0005730	nucleolus	IEP	HCCA
BP	GO:0006260	DNA replication	IEP	HCCA
BP	GO:0006325	chromatin organization	IEP	HCCA
BP	GO:0006334	nucleosome assembly	IEP	HCCA
BP	GO:0006338	chromatin remodeling	IEP	HCCA
BP	GO:0006913	nucleocytoplasmic transport	IEP	HCCA
MF	GO:0008134	transcription factor binding	IEP	HCCA
BP	GO:0009451	RNA modification	IEP	HCCA
MF	GO:0009982	pseudouridine synthase activity	IEP	HCCA
MF	GO:0016866	intramolecular transferase activity	IEP	HCCA
MF	GO:0017056	structural constituent of nuclear pore	IEP	HCCA
CC	GO:0030684	preribosome	IEP	HCCA
CC	GO:0032040	small-subunit processome	IEP	HCCA
BP	GO:0034728	nucleosome organization	IEP	HCCA
BP	GO:0051169	nuclear transport	IEP	HCCA
BP	GO:0065004	protein-DNA complex assembly	IEP	HCCA
BP	GO:0071824	protein-DNA complex subunit organization	IEP	HCCA
BP	GO:0071897	DNA biosynthetic process	IEP	HCCA
BP	GO:0090304	nucleic acid metabolic process	IEP	HCCA
CC	GO:1990904	ribonucleoprotein complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR025755	Ribos_L4_C_dom	275	347
IPR002136	Ribosomal_L4/L1e	23	262

External Links

No external refs found!

Sam_g13131

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation