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  5. Sam_g13056

Sam_g13056


Description : plastidial ribosome hibernation-promoting factor *(PSRP1) & original description: none


Gene families : OG0004521 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004521_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g13056

Target Alias Description ECC score Gene Family Method Actions
AT5G24490 No alias 30S ribosomal protein, putative 0.04 OrthoFinder output from all 47 species
Aob_g38611 No alias plastidial ribosome hibernation-promoting factor... 0.04 OrthoFinder output from all 47 species
Ceric.23G056600.1 Ceric.23G056600 plastidial ribosome hibernation-promoting factor... 0.03 OrthoFinder output from all 47 species
GSVIVT01038643001 No alias Protein biosynthesis.organelle translation... 0.03 OrthoFinder output from all 47 species
LOC_Os03g63950.1 LOC_Os03g63950 plastidial ribosome hibernation-promoting factor (PSRP1) 0.03 OrthoFinder output from all 47 species
Nbi_g04151 No alias plastidial ribosome hibernation-promoting factor... 0.02 OrthoFinder output from all 47 species
Ore_g30023 No alias plastidial ribosome hibernation-promoting factor... 0.03 OrthoFinder output from all 47 species
Ppi_g06824 No alias plastidial ribosome hibernation-promoting factor... 0.02 OrthoFinder output from all 47 species
Solyc06g073090.3.1 Solyc06g073090 plastidial ribosome hibernation-promoting factor (PSRP1) 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0044238 primary metabolic process IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004089 carbonate dehydratase activity IEP HCCA
MF GO:0004497 monooxygenase activity IEP HCCA
MF GO:0004611 phosphoenolpyruvate carboxykinase activity IEP HCCA
MF GO:0004721 phosphoprotein phosphatase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005506 iron ion binding IEP HCCA
BP GO:0006099 tricarboxylic acid cycle IEP HCCA
MF GO:0008138 protein tyrosine/serine/threonine phosphatase activity IEP HCCA
MF GO:0008964 phosphoenolpyruvate carboxylase activity IEP HCCA
BP GO:0015977 carbon fixation IEP HCCA
BP GO:0016311 dephosphorylation IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
MF GO:0016701 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen IEP HCCA
MF GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen IEP HCCA
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP HCCA
MF GO:0016791 phosphatase activity IEP HCCA
MF GO:0016829 lyase activity IEP HCCA
MF GO:0016830 carbon-carbon lyase activity IEP HCCA
MF GO:0016831 carboxy-lyase activity IEP HCCA
MF GO:0016835 carbon-oxygen lyase activity IEP HCCA
MF GO:0016836 hydro-lyase activity IEP HCCA
MF GO:0020037 heme binding IEP HCCA
MF GO:0030246 carbohydrate binding IEP HCCA
MF GO:0030247 polysaccharide binding IEP HCCA
MF GO:0042578 phosphoric ester hydrolase activity IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043169 cation binding IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0046906 tetrapyrrole binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
MF GO:0051213 dioxygenase activity IEP HCCA
MF GO:2001070 starch binding IEP HCCA
InterPro domains Description Start Stop
IPR003489 RHF/RaiA 87 183
IPR032528 Ribosom_S30AE_C 214 268
No external refs found!