Sam_g12861


Description : component *(THOC5) of mRNP trafficking THO subcomplex & original description: none


Gene families : OG0003012 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003012_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g12861
Cluster HCCA: Cluster_146

Target Alias Description ECC score Gene Family Method Actions
Als_g01136 THO5, AtTHO5 component *(THOC5) of mRNP trafficking THO subcomplex &... 0.03 OrthoFinder output from all 47 species
Aspi01Gene58570.t1 THO5, AtTHO5,... component *(THOC5) of mRNP trafficking THO subcomplex &... 0.03 OrthoFinder output from all 47 species
Dac_g40245 THO5, AtTHO5 component *(THOC5) of mRNP trafficking THO subcomplex &... 0.02 OrthoFinder output from all 47 species
Lfl_g02128 THO5, AtTHO5 component *(THOC5) of mRNP trafficking THO subcomplex &... 0.02 OrthoFinder output from all 47 species
MA_7673g0010 THO5, AtTHO5 THO complex subunit 5A OS=Arabidopsis thaliana... 0.01 OrthoFinder output from all 47 species
Ppi_g10313 THO5, AtTHO5 component *(THOC5) of mRNP trafficking THO subcomplex &... 0.02 OrthoFinder output from all 47 species
Solyc04g078830.3.1 THO5, AtTHO5,... component THOC5 of mRNP trafficking THO subcomplex 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006334 nucleosome assembly IEP HCCA
BP GO:0006338 chromatin remodeling IEP HCCA
MF GO:0008483 transaminase activity IEP HCCA
MF GO:0016769 transferase activity, transferring nitrogenous groups IEP HCCA
MF GO:0019842 vitamin binding IEP HCCA
MF GO:0030170 pyridoxal phosphate binding IEP HCCA
CC GO:0032993 protein-DNA complex IEP HCCA
BP GO:0034728 nucleosome organization IEP HCCA
MF GO:0042626 ATPase-coupled transmembrane transporter activity IEP HCCA
CC GO:0044815 DNA packaging complex IEP HCCA
BP GO:0055085 transmembrane transport IEP HCCA
BP GO:0065004 protein-DNA complex assembly IEP HCCA
MF GO:0070279 vitamin B6 binding IEP HCCA
BP GO:0071824 protein-DNA complex subunit organization IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0140359 ABC-type transporter activity IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR019163 THO_Thoc5 66 419
No external refs found!