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  5. Sam_g12677

Sam_g12677


Description : component *(uS10c) of small plastid ribosomal-subunit proteome & original description: none


Gene families : OG0005087 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005087_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g12677

Target Alias Description ECC score Gene Family Method Actions
AT3G13120 No alias Ribosomal protein S10p/S20e family protein 0.07 OrthoFinder output from all 47 species
Adi_g110634 No alias component *(uS10c) of small plastid ribosomal-subunit... 0.02 OrthoFinder output from all 47 species
Als_g12393 No alias component *(uS10c) of small plastid ribosomal-subunit... 0.06 OrthoFinder output from all 47 species
Aop_g01016 No alias component *(uS10c) of small plastid ribosomal-subunit... 0.08 OrthoFinder output from all 47 species
Aspi01Gene11300.t1 Aspi01Gene11300 component *(uS10c) of small plastid ribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Azfi_s0015.g013794 No alias component *(uS10c) of small plastid ribosomal-subunit... 0.05 OrthoFinder output from all 47 species
Cba_g65626 No alias component *(uS10c) of small plastid ribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Ceric.34G039900.1 Ceric.34G039900 component *(uS10c) of small plastid ribosomal-subunit... 0.06 OrthoFinder output from all 47 species
Cre03.g195650 No alias Protein biosynthesis.organelle translation... 0.05 OrthoFinder output from all 47 species
Dac_g37977 No alias component *(uS10c) of small plastid ribosomal-subunit... 0.05 OrthoFinder output from all 47 species
Dcu_g02308 No alias component *(uS10c) of small plastid ribosomal-subunit... 0.05 OrthoFinder output from all 47 species
Dde_g03129 No alias component *(uS10c) of small plastid ribosomal-subunit... 0.05 OrthoFinder output from all 47 species
Ehy_g00382 No alias component *(uS10c) of small plastid ribosomal-subunit... 0.03 OrthoFinder output from all 47 species
GSVIVT01014640001 No alias Protein biosynthesis.organelle translation... 0.03 OrthoFinder output from all 47 species
Gb_11573 No alias component psRPS10 of small ribosomal subunit proteome 0.06 OrthoFinder output from all 47 species
LOC_Os03g10060.1 LOC_Os03g10060 component psRPS10 of small ribosomal subunit proteome 0.07 OrthoFinder output from all 47 species
Len_g05104 No alias component *(uS10c) of small plastid ribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Lfl_g00728 No alias component *(uS10c) of small plastid ribosomal-subunit... 0.07 OrthoFinder output from all 47 species
MA_10432148g0010 No alias component psRPS10 of small ribosomal subunit proteome 0.04 OrthoFinder output from all 47 species
Mp7g14220.1 No alias component psRPS10 of small ribosomal subunit proteome 0.08 OrthoFinder output from all 47 species
Msp_g06896 No alias component *(uS10c) of small plastid ribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Nbi_g28161 No alias component *(uS10c) of small plastid ribosomal-subunit... 0.05 OrthoFinder output from all 47 species
Pnu_g14839 No alias component *(uS10c) of small plastid ribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Pp3c20_8830V3.1 Pp3c20_8830 Ribosomal protein S10p/S20e family protein 0.02 OrthoFinder output from all 47 species
Pp3c24_19230V3.1 Pp3c24_19230 Ribosomal protein S10p/S20e family protein 0.03 OrthoFinder output from all 47 species
Ppi_g10665 No alias component *(uS10c) of small plastid ribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Smo118761 No alias Protein biosynthesis.organelle translation... 0.03 OrthoFinder output from all 47 species
Solyc10g006030.3.1 Solyc10g006030 component psRPS10 of small ribosomal subunit proteome 0.07 OrthoFinder output from all 47 species
Spa_g16248 No alias component *(uS10c) of small plastid ribosomal-subunit... 0.06 OrthoFinder output from all 47 species
Spa_g35752 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g54664 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Tin_g09762 No alias component *(uS10c) of small plastid ribosomal-subunit... 0.06 OrthoFinder output from all 47 species
Zm00001e000789_P001 Zm00001e000789 component psRPS10 of small ribosomal subunit proteome 0.04 OrthoFinder output from all 47 species
Zm00001e038796_P002 Zm00001e038796 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005840 ribosome IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0006810 transport IEP HCCA
BP GO:0008104 protein localization IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0015031 protein transport IEP HCCA
CC GO:0016020 membrane IEP HCCA
BP GO:0017038 protein import IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0071702 organic substance transport IEP HCCA
BP GO:0071705 nitrogen compound transport IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR027486 Ribosomal_S10_dom 91 185
No external refs found!