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  5. Sam_g12492

Sam_g12492


Description : not classified & original description: none


Gene families : OG0001977 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001977_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g12492

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00119p00113390 evm_27.TU.AmTr_v1... Probable helicase MAGATAMA 3 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
AT4G30100 No alias P-loop containing nucleoside triphosphate hydrolases... 0.03 OrthoFinder output from all 47 species
Aev_g08028 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g04377 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g21108 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene56693.t2 Aspi01Gene56693 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0002.g001589 No alias not classified & original description: CDS=279-4346 0.03 OrthoFinder output from all 47 species
Ceric.35G070300.1 Ceric.35G070300 not classified & original description: pacid=50580926... 0.02 OrthoFinder output from all 47 species
GSVIVT01009001001 No alias Probable helicase MAGATAMA 3 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Lfl_g07603 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g13066 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
MA_88596g0010 No alias Probable helicase MAGATAMA 3 OS=Arabidopsis thaliana... 0.07 OrthoFinder output from all 47 species
Ore_g38225 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Solyc04g072840.3.1 Solyc04g072840 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Zm00001e012950_P003 Zm00001e012950 Probable helicase MAGATAMA 3 OS=Arabidopsis thaliana... 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0004386 helicase activity IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000290 deadenylation-dependent decapping of nuclear-transcribed mRNA IEP HCCA
BP GO:0000469 cleavage involved in rRNA processing IEP HCCA
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003682 chromatin binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004843 cysteine-type deubiquitinase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005634 nucleus IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006401 RNA catabolic process IEP HCCA
BP GO:0006402 mRNA catabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
MF GO:0008047 enzyme activator activity IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
BP GO:0009892 negative regulation of metabolic process IEP HCCA
BP GO:0010605 negative regulation of macromolecule metabolic process IEP HCCA
BP GO:0010629 negative regulation of gene expression IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
BP GO:0019439 aromatic compound catabolic process IEP HCCA
MF GO:0019783 ubiquitin-like protein peptidase activity IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0034655 nucleobase-containing compound catabolic process IEP HCCA
BP GO:0043085 positive regulation of catalytic activity IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0044093 positive regulation of molecular function IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
BP GO:0044270 cellular nitrogen compound catabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0046700 heterocycle catabolic process IEP HCCA
BP GO:0048519 negative regulation of biological process IEP HCCA
BP GO:0050790 regulation of catalytic activity IEP HCCA
BP GO:0065009 regulation of molecular function IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:0090305 nucleic acid phosphodiester bond hydrolysis IEP HCCA
BP GO:0090501 RNA phosphodiester bond hydrolysis IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0101005 deubiquitinase activity IEP HCCA
BP GO:0110154 RNA decapping IEP HCCA
BP GO:0110156 methylguanosine-cap decapping IEP HCCA
MF GO:0140677 molecular function activator activity IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901361 organic cyclic compound catabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR041679 DNA2/NAM7-like_C 840 1035
IPR041677 DNA2/NAM7_AAA_11 481 833
No external refs found!