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  5. Sam_g12436

Sam_g12436


Description : subfamily ABCG transporter & original description: none


Gene families : OG0000071 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000071_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g12436

Target Alias Description ECC score Gene Family Method Actions
AT3G30842 ATPDR10, PDR10 pleiotropic drug resistance 10 0.02 OrthoFinder output from all 47 species
AT4G15215 ATPDR13, PDR13 pleiotropic drug resistance 13 0.03 OrthoFinder output from all 47 species
Als_g18808 PEN3, ABCG36,... subfamily ABCG transporter & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g65335 PDR6, ATPDR6 subfamily ABCG transporter & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g27199 PDR6, ATPDR6 subfamily ABCG transporter & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g41199 PDR11, ATPDR11 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g76298 PEN3, ABCG36,... subfamily ABCG transporter & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g05852 ABCG40, PDR12,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g38790 PDR6, ATPDR6 subfamily ABCG transporter & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g01769 PEN3, ABCG36,... subfamily ABCG transporter & original description: none 0.02 OrthoFinder output from all 47 species
Gb_04573 PEN3, ABCG36,... subfamily ABCG transporter 0.03 OrthoFinder output from all 47 species
Gb_34646 PDR4, ATPDR4 cuticular lipid exporter (PEC1). subfamily ABCG transporter 0.03 OrthoFinder output from all 47 species
MA_10430834g0010 PEN3, ABCG36,... subfamily ABCG transporter 0.04 OrthoFinder output from all 47 species
MA_10437197g0020 PDR6, ATPDR6 subfamily ABCG transporter 0.02 OrthoFinder output from all 47 species
MA_184352g0010 ABCG40, PDR12,... ABC transporter G family member 36 OS=Oryza sativa... 0.03 OrthoFinder output from all 47 species
MA_30116g0010 ABCG40, PDR12,... no description available(sp|h6ws94|pdr1_pethy : 347.0) 0.02 OrthoFinder output from all 47 species
MA_38272g0010 ATPDR7, PDR7 subfamily ABCG transporter 0.05 OrthoFinder output from all 47 species
MA_42871g0010 PEN3, ABCG36,... subfamily ABCG transporter 0.04 OrthoFinder output from all 47 species
MA_42871g0020 PEN3, ABCG36,... ABC transporter G family member 40 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
MA_84624g0010 ATPDR7, PDR7 subfamily ABCG transporter 0.03 OrthoFinder output from all 47 species
Mp1g25350.1 ATPDR7, PDR7 subfamily ABCG transporter 0.02 OrthoFinder output from all 47 species
Ore_g15168 ABCG40, PDR12,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g39006 PDR6, ATPDR6 subfamily ABCG transporter & original description: none 0.04 OrthoFinder output from all 47 species
Solyc09g091660.3.1 ABCG40, PDR12,... subfamily ABCG transporter 0.02 OrthoFinder output from all 47 species
Spa_g50979 PEN3, ABCG36,... subfamily ABCG transporter & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0043565 sequence-specific DNA binding IEP HCCA
InterPro domains Description Start Stop
IPR013525 ABC_2_trans 302 514
IPR043926 ABCG_dom 126 181
IPR003439 ABC_transporter-like_ATP-bd 669 821
IPR013581 PDR_assoc 533 590
IPR003439 ABC_transporter-like_ATP-bd 33 95
No external refs found!