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  5. Sam_g12400

Sam_g12400


Description : regulatory protein *(NOF1) of rDNA transcription & original description: none


Gene families : OG0005501 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005501_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g12400

Target Alias Description ECC score Gene Family Method Actions
AT1G17690 NOF1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:... 0.03 OrthoFinder output from all 47 species
Aob_g32853 NOF1 regulatory protein *(NOF1) of rDNA transcription &... 0.02 OrthoFinder output from all 47 species
Aop_g26239 NOF1 regulatory protein *(NOF1) of rDNA transcription &... 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000789.38 No alias No description available 0.01 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000789.39 No alias RNA biosynthesis.rRNA biogenesis.NOF1 control factor 0.03 OrthoFinder output from all 47 species
Cre04.g218300 NOF1 RNA biosynthesis.rRNA biogenesis.NOF1 control factor 0.03 OrthoFinder output from all 47 species
Dde_g01673 NOF1 regulatory protein *(NOF1) of rDNA transcription &... 0.03 OrthoFinder output from all 47 species
GSVIVT01010908001 NOF1 RNA biosynthesis.rRNA biogenesis.NOF1 control factor 0.02 OrthoFinder output from all 47 species
LOC_Os05g22920.1 NOF1, LOC_Os05g22920 rDNA transcriptional regulator (NOF1) 0.06 OrthoFinder output from all 47 species
MA_10437067g0010 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Mp7g03720.1 NOF1 rDNA transcriptional regulator (NOF1) 0.03 OrthoFinder output from all 47 species
Ppi_g01193 NOF1 regulatory protein *(NOF1) of rDNA transcription &... 0.03 OrthoFinder output from all 47 species
Smo104941 NOF1 RNA biosynthesis.rRNA biogenesis.NOF1 control factor 0.02 OrthoFinder output from all 47 species
Smo446868 NOF1 RNA biosynthesis.rRNA biogenesis.NOF1 control factor 0.03 OrthoFinder output from all 47 species
Solyc07g009350.4.1 NOF1, Solyc07g009350 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Tin_g18828 NOF1 regulatory protein *(NOF1) of rDNA transcription &... 0.03 OrthoFinder output from all 47 species
Zm00001e039338_P003 NOF1, Zm00001e039338 rDNA transcriptional regulator (NOF1) 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0005730 nucleolus IEA Interproscan
BP GO:0006364 rRNA processing IEA Interproscan
MF GO:0034511 U3 snoRNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0003712 transcription coregulator activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005643 nuclear pore IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006298 mismatch repair IEP HCCA
BP GO:0006479 protein methylation IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
BP GO:0006606 protein import into nucleus IEP HCCA
BP GO:0006913 nucleocytoplasmic transport IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
MF GO:0008170 N-methyltransferase activity IEP HCCA
BP GO:0008213 protein alkylation IEP HCCA
MF GO:0008276 protein methyltransferase activity IEP HCCA
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP HCCA
MF GO:0016278 lysine N-methyltransferase activity IEP HCCA
MF GO:0016279 protein-lysine N-methyltransferase activity IEP HCCA
BP GO:0016570 histone modification IEP HCCA
BP GO:0016571 histone methylation IEP HCCA
CC GO:0016592 mediator complex IEP HCCA
MF GO:0017056 structural constituent of nuclear pore IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
BP GO:0018022 peptidyl-lysine methylation IEP HCCA
MF GO:0018024 histone lysine N-methyltransferase activity IEP HCCA
BP GO:0018205 peptidyl-lysine modification IEP HCCA
MF GO:0019899 enzyme binding IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0030983 mismatched DNA binding IEP HCCA
MF GO:0031625 ubiquitin protein ligase binding IEP HCCA
BP GO:0032259 methylation IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0033365 protein localization to organelle IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
BP GO:0034504 protein localization to nucleus IEP HCCA
BP GO:0034968 histone lysine methylation IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0042054 histone methyltransferase activity IEP HCCA
BP GO:0043414 macromolecule methylation IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
MF GO:0043743 LPPG:FO 2-phospho-L-lactate transferase activity IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
MF GO:0044389 ubiquitin-like protein ligase binding IEP HCCA
BP GO:0051169 nuclear transport IEP HCCA
BP GO:0051170 import into nucleus IEP HCCA
MF GO:0051287 NAD binding IEP HCCA
MF GO:0051536 iron-sulfur cluster binding IEP HCCA
MF GO:0051540 metal cluster binding IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
BP GO:0072594 establishment of protein localization to organelle IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
InterPro domains Description Start Stop
IPR010678 UTP25 260 736
No external refs found!