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  5. Sam_g11927

Sam_g11927


Description : not classified & original description: none


Gene families : OG0000143 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000143_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g11927

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00012p00212610 evm_27.TU.AmTr_v1... No description available 0.02 OrthoFinder output from all 47 species
AT1G77145 No alias Protein of unknown function (DUF506) 0.02 OrthoFinder output from all 47 species
AT2G20670 No alias Protein of unknown function (DUF506) 0.02 OrthoFinder output from all 47 species
AT2G38820 No alias Protein of unknown function (DUF506) 0.02 OrthoFinder output from all 47 species
Adi_g011111 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g019139 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g052715 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g03142 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene15991.t1 Aspi01Gene15991 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene43866.t1 Aspi01Gene43866 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0006.g010379 No alias not classified & original description: CDS=290-1537 0.04 OrthoFinder output from all 47 species
Azfi_s0038.g026352 No alias not classified & original description: CDS=79-1266 0.02 OrthoFinder output from all 47 species
Ceric.01G087300.1 Ceric.01G087300 not classified & original description: pacid=50591762... 0.02 OrthoFinder output from all 47 species
Ceric.27G003000.1 Ceric.27G003000 not classified & original description: pacid=50605227... 0.03 OrthoFinder output from all 47 species
Dde_g35422 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g02508 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01026527001 No alias No description available 0.02 OrthoFinder output from all 47 species
Gb_28136 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Len_g29121 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g30206 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
MA_10117499g0010 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Mp5g23920.1 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Msp_g06137 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g06657 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g35496 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g20412 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g22303 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g08409 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g24161 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g41587 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0006.g003040 No alias not classified & original description: CDS=1-1485 0.04 OrthoFinder output from all 47 species
Solyc06g007580.1.1 Solyc06g007580 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Solyc06g053910.4.1 Solyc06g053910 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Spa_g06813 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g08735 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g08145 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g10664 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g14496 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR006502 PDDEXK-like 31 254
No external refs found!