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  5. Sam_g11691

Sam_g11691


Description : not classified & original description: none


Gene families : OG0000699 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000699_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g11691
Cluster HCCA: Cluster_120

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00045p00153850 FHY2, HY8, PHYA,... External stimuli response.light.red/far red light.PHY... 0.03 OrthoFinder output from all 47 species
AMTR_s00047p00076620 PHYC,... External stimuli response.light.red/far red light.PHY... 0.03 OrthoFinder output from all 47 species
AMTR_s00047p00076760 PHYC,... External stimuli response.light.red/far red light.PHY... 0.02 OrthoFinder output from all 47 species
Aev_g07985 HY3, OOP1, PHYB temperature sensor protein *(PHY-B) & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene09133.t1 HY3, OOP1, PHYB,... temperature sensor protein *(PHY-B) & original description: none 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001067.18 PHYC Phytochrome C OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Dcu_g04116 HY3, OOP1, PHYB temperature sensor protein *(PHY-B) & original description: none 0.05 OrthoFinder output from all 47 species
Ehy_g09261 HY3, OOP1, PHYB temperature sensor protein *(PHY-B) & original description: none 0.02 OrthoFinder output from all 47 species
Len_g12690 HY3, OOP1, PHYB not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g32315 HY3, OOP1, PHYB phytochrome photoreceptor *(PHY) & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g11409 HY3, OOP1, PHYB temperature sensor protein *(PHY-B) & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g24766 HY3, OOP1, PHYB phytochrome photoreceptor *(PHY) & original description: none 0.03 OrthoFinder output from all 47 species
Solyc01g059870.4.1 HY3, OOP1, PHYB,... phytochrome photoreceptor (PHY). temperature sensor... 0.02 OrthoFinder output from all 47 species
Tin_g20479 HY3, OOP1, PHYB temperature sensor protein *(PHY-B) & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0006355 regulation of DNA-templated transcription IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEP HCCA
CC GO:0005634 nucleus IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0043531 ADP binding IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
InterPro domains Description Start Stop
IPR003661 HisK_dim/P 118 169
IPR003594 HATPase_C 226 338
IPR013767 PAS_fold 1 92
No external refs found!