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  5. Sam_g11618

Sam_g11618


Description : CORVET-specific component *(VPS8) of HOPS/CORVET membrane tethering complexes & original description: none


Gene families : OG0004817 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004817_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g11618

Target Alias Description ECC score Gene Family Method Actions
AT4G00800 No alias transducin family protein / WD-40 repeat family protein 0.07 OrthoFinder output from all 47 species
Ala_g12813 No alias CORVET-specific component *(VPS8) of HOPS/CORVET... 0.02 OrthoFinder output from all 47 species
Als_g32080 No alias CORVET-specific component *(VPS8) of HOPS/CORVET... 0.02 OrthoFinder output from all 47 species
Aob_g31629 No alias CORVET-specific component *(VPS8) of HOPS/CORVET... 0.04 OrthoFinder output from all 47 species
Aspi01Gene38237.t1 Aspi01Gene38237 CORVET-specific component *(VPS8) of HOPS/CORVET... 0.02 OrthoFinder output from all 47 species
Ceric.08G032600.1 Ceric.08G032600 CORVET-specific component *(VPS8) of HOPS/CORVET... 0.02 OrthoFinder output from all 47 species
Ehy_g19649 No alias CORVET-specific component *(VPS8) of HOPS/CORVET... 0.03 OrthoFinder output from all 47 species
GSVIVT01027438001 No alias Vesicle trafficking.target membrane... 0.03 OrthoFinder output from all 47 species
Gb_27586 No alias CORVET-specific component VPS8 of HOPS/CORVET membrane... 0.09 OrthoFinder output from all 47 species
LOC_Os02g03220.1 LOC_Os02g03220 CORVET-specific component VPS8 of HOPS/CORVET membrane... 0.02 OrthoFinder output from all 47 species
Lfl_g29102 No alias CORVET-specific component *(VPS8) of HOPS/CORVET... 0.06 OrthoFinder output from all 47 species
Mp8g08230.1 No alias CORVET-specific component VPS8 of HOPS/CORVET membrane... 0.03 OrthoFinder output from all 47 species
Pnu_g27074 No alias CORVET-specific component *(VPS8) of HOPS/CORVET... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0195.g025456 No alias CORVET-specific component *(VPS8) of HOPS/CORVET... 0.03 OrthoFinder output from all 47 species
Solyc05g044610.3.1 Solyc05g044610 CORVET-specific component VPS8 of HOPS/CORVET membrane... 0.04 OrthoFinder output from all 47 species
Zm00001e013515_P001 Zm00001e013515 CORVET-specific component VPS8 of HOPS/CORVET membrane... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0006886 intracellular protein transport IEA Interproscan
BP GO:0016192 vesicle-mediated transport IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003774 cytoskeletal motor activity IEP HCCA
MF GO:0003777 microtubule motor activity IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0004672 protein kinase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006468 protein phosphorylation IEP HCCA
BP GO:0007017 microtubule-based process IEP HCCA
BP GO:0007018 microtubule-based movement IEP HCCA
MF GO:0008017 microtubule binding IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
MF GO:0015631 tubulin binding IEP HCCA
MF GO:0016301 kinase activity IEP HCCA
BP GO:0016310 phosphorylation IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR000547 Clathrin_H-chain/VPS_repeat 1518 1585
IPR025941 Vps8_central_dom 1025 1210
No external refs found!