Sam_g11434

Description : component *(ARPF2) of ARPF2-ARRS1 complex & original description: none

Gene families : OG0006885 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006885_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Sam_g11434
Cluster	HCCA: Cluster_145

Target	Alias	Description	ECC score	Gene Family Method
AT3G23620	No alias	Ribosomal RNA processing Brix domain protein	0.04	OrthoFinder output from all 47 species
Aev_g03783	No alias	component *(ARPF2) of ARPF2-ARRS1 complex & original...	0.04	OrthoFinder output from all 47 species
Ala_g21460	No alias	component *(ARPF2) of ARPF2-ARRS1 complex & original...	0.04	OrthoFinder output from all 47 species
Azfi_s0388.g067595	No alias	component *(ARPF2) of ARPF2-ARRS1 complex & original...	0.02	OrthoFinder output from all 47 species
Cba_g07304	No alias	component *(ARPF2) of ARPF2-ARRS1 complex & original...	0.02	OrthoFinder output from all 47 species
Ceric.01G026800.1	Ceric.01G026800	component *(ARPF2) of ARPF2-ARRS1 complex & original...	0.04	OrthoFinder output from all 47 species
Cre03.g197000	No alias	Ribosome production factor 2 homolog OS=Arabidopsis thaliana	0.02	OrthoFinder output from all 47 species
Ehy_g06742	No alias	component *(ARPF2) of ARPF2-ARRS1 complex & original...	0.03	OrthoFinder output from all 47 species
GSVIVT01033782001	No alias	Ribosome production factor 2 homolog OS=Arabidopsis thaliana	0.03	OrthoFinder output from all 47 species
Gb_27395	No alias	component ARPF2 of ARPF2-ARRS1 complex	0.04	OrthoFinder output from all 47 species
LOC_Os01g33030.1	LOC_Os01g33030	component ARPF2 of ARPF2-ARRS1 complex	0.03	OrthoFinder output from all 47 species
MA_89741g0010	No alias	component ARPF2 of ARPF2-ARRS1 complex	0.02	OrthoFinder output from all 47 species
Mp4g01500.1	No alias	component ARPF2 of ARPF2-ARRS1 complex	0.03	OrthoFinder output from all 47 species
Nbi_g07801	No alias	component *(ARPF2) of ARPF2-ARRS1 complex & original...	0.03	OrthoFinder output from all 47 species
Pp3c26_6490V3.1	Pp3c26_6490	Ribosomal RNA processing Brix domain protein	0.01	OrthoFinder output from all 47 species
Smo73689	No alias	Ribosome production factor 2 homolog OS=Oryza sativa...	0.02	OrthoFinder output from all 47 species
Solyc10g083600.2.1	Solyc10g083600	component ARPF2 of ARPF2-ARRS1 complex	0.04	OrthoFinder output from all 47 species
Zm00001e032080_P001	Zm00001e032080	component ARPF2 of ARPF2-ARRS1 complex	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	None	Extended
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006364	rRNA processing	IEA	Interproscan
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016072	rRNA metabolic process	None	Extended
MF	GO:0019843	rRNA binding	IEA	Interproscan
BP	GO:0034470	ncRNA processing	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034660	ncRNA metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0003735	structural constituent of ribosome	IEP	HCCA
MF	GO:0003743	translation initiation factor activity	IEP	HCCA
MF	GO:0005198	structural molecule activity	IEP	HCCA
CC	GO:0005575	cellular_component	IEP	HCCA
CC	GO:0005634	nucleus	IEP	HCCA
CC	GO:0005737	cytoplasm	IEP	HCCA
CC	GO:0005840	ribosome	IEP	HCCA
CC	GO:0005852	eukaryotic translation initiation factor 3 complex	IEP	HCCA
BP	GO:0006412	translation	IEP	HCCA
BP	GO:0006518	peptide metabolic process	IEP	HCCA
MF	GO:0008135	translation factor activity, RNA binding	IEP	HCCA
BP	GO:0009719	response to endogenous stimulus	IEP	HCCA
BP	GO:0009725	response to hormone	IEP	HCCA
BP	GO:0010033	response to organic substance	IEP	HCCA
CC	GO:0032991	protein-containing complex	IEP	HCCA
BP	GO:0034645	cellular macromolecule biosynthetic process	IEP	HCCA
BP	GO:0042221	response to chemical	IEP	HCCA
BP	GO:0043043	peptide biosynthetic process	IEP	HCCA
CC	GO:0043226	organelle	IEP	HCCA
CC	GO:0043228	non-membrane-bounded organelle	IEP	HCCA
CC	GO:0043229	intracellular organelle	IEP	HCCA
CC	GO:0043232	intracellular non-membrane-bounded organelle	IEP	HCCA
BP	GO:0043603	amide metabolic process	IEP	HCCA
BP	GO:0043604	amide biosynthetic process	IEP	HCCA
MF	GO:0045182	translation regulator activity	IEP	HCCA
MF	GO:0090079	translation regulator activity, nucleic acid binding	IEP	HCCA
CC	GO:0110165	cellular anatomical entity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR007109	Brix	35	232

External Links

No external refs found!

Sam_g11434

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation