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Description : scaffold component *(Nop56) of snoRNP rRNA methylation complex & original description: none
Gene families : OG0004657 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004657_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00005p00226680 | NOP56,... | RNA processing.RNA modification.rRNA/tRNA... | 0.02 | OrthoFinder output from all 47 species | |
| AT1G56110 | NOP56 | homolog of nucleolar protein NOP56 | 0.07 | OrthoFinder output from all 47 species | |
| AT3G12860 | No alias | NOP56-like pre RNA processing ribonucleoprotein | 0.03 | OrthoFinder output from all 47 species | |
| Adi_g050304 | NOP56 | scaffold component *(Nop56) of snoRNP rRNA methylation... | 0.02 | OrthoFinder output from all 47 species | |
| Als_g07194 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Aspi01Gene34301.t1 | NOP56, Aspi01Gene34301 | scaffold component *(Nop56) of snoRNP rRNA methylation... | 0.02 | OrthoFinder output from all 47 species | |
| Cba_g57048 | No alias | scaffold component *(Nop56) of snoRNP rRNA methylation... | 0.06 | OrthoFinder output from all 47 species | |
| Cba_g77651 | No alias | scaffold component *(Nop56) of snoRNP rRNA methylation... | 0.04 | OrthoFinder output from all 47 species | |
| Cpa|evm.model.tig00001073.20 | NOP56 | RNA processing.RNA modification.rRNA/tRNA... | 0.02 | OrthoFinder output from all 47 species | |
| Cre12.g525200 | NOP56 | RNA processing.RNA modification.rRNA/tRNA... | 0.02 | OrthoFinder output from all 47 species | |
| Dac_g14259 | NOP56 | scaffold component *(Nop56) of snoRNP rRNA methylation... | 0.04 | OrthoFinder output from all 47 species | |
| Ehy_g06884 | NOP56 | scaffold component *(Nop56) of snoRNP rRNA methylation... | 0.03 | OrthoFinder output from all 47 species | |
| GSVIVT01008506001 | NOP56 | RNA processing.RNA modification.rRNA/tRNA... | 0.08 | OrthoFinder output from all 47 species | |
| Gb_05243 | NOP56 | snoRNP scaffold component Nop56 of snoRNP rRNA... | 0.05 | OrthoFinder output from all 47 species | |
| LOC_Os03g22880.1 | NOP56, LOC_Os03g22880 | snoRNP scaffold component Nop56 of snoRNP rRNA... | 0.04 | OrthoFinder output from all 47 species | |
| MA_10434077g0010 | NOP56 | snoRNP scaffold component Nop56 of snoRNP rRNA... | 0.06 | OrthoFinder output from all 47 species | |
| MA_9961528g0010 | NOP56 | Probable nucleolar protein 5-1 OS=Arabidopsis thaliana... | 0.03 | OrthoFinder output from all 47 species | |
| Mp2g23840.1 | NOP56 | snoRNP scaffold component Nop56 of snoRNP rRNA... | 0.04 | OrthoFinder output from all 47 species | |
| Ore_g37588 | NOP56 | scaffold component *(Nop56) of snoRNP rRNA methylation... | 0.03 | OrthoFinder output from all 47 species | |
| Solyc01g100570.4.1 | NOP56, Solyc01g100570 | snoRNP scaffold component Nop56 of snoRNP rRNA... | 0.05 | OrthoFinder output from all 47 species | |
| Spa_g43368 | No alias | scaffold component *(Nop56) of snoRNP rRNA methylation... | 0.02 | OrthoFinder output from all 47 species | |
| Spa_g48006 | NOP56 | scaffold component *(Nop56) of snoRNP rRNA methylation... | 0.03 | OrthoFinder output from all 47 species | |
| Tin_g03400 | No alias | scaffold component *(Nop56) of snoRNP rRNA methylation... | 0.03 | OrthoFinder output from all 47 species | |
| Zm00001e001676_P001 | NOP56, Zm00001e001676 | snoRNP scaffold component Nop56 of snoRNP rRNA... | 0.03 | OrthoFinder output from all 47 species | |
| Zm00001e038196_P002 | NOP56, Zm00001e038196 | snoRNP scaffold component Nop56 of snoRNP rRNA... | 0.03 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0001522 | pseudouridine synthesis | IEP | HCCA |
| MF | GO:0004807 | triose-phosphate isomerase activity | IEP | HCCA |
| BP | GO:0006325 | chromatin organization | IEP | HCCA |
| BP | GO:0006334 | nucleosome assembly | IEP | HCCA |
| BP | GO:0006338 | chromatin remodeling | IEP | HCCA |
| BP | GO:0009451 | RNA modification | IEP | HCCA |
| MF | GO:0009982 | pseudouridine synthase activity | IEP | HCCA |
| MF | GO:0016853 | isomerase activity | IEP | HCCA |
| MF | GO:0016860 | intramolecular oxidoreductase activity | IEP | HCCA |
| MF | GO:0016861 | intramolecular oxidoreductase activity, interconverting aldoses and ketoses | IEP | HCCA |
| MF | GO:0016866 | intramolecular transferase activity | IEP | HCCA |
| BP | GO:0034728 | nucleosome organization | IEP | HCCA |
| BP | GO:0043933 | protein-containing complex organization | IEP | HCCA |
| BP | GO:0065003 | protein-containing complex assembly | IEP | HCCA |
| BP | GO:0065004 | protein-DNA complex assembly | IEP | HCCA |
| BP | GO:0071824 | protein-DNA complex subunit organization | IEP | HCCA |
| No external refs found! |