Sam_g10527


Description : not classified & original description: none


Gene families : OG0005774 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005774_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g10527
Cluster HCCA: Cluster_146

Target Alias Description ECC score Gene Family Method Actions
AT1G64600 No alias methyltransferases;copper ion binding 0.03 OrthoFinder output from all 47 species
Adi_g008711 No alias component *(mS22) of small mitoribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Als_g12396 No alias component *(mS22) of small mitoribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Aob_g07347 No alias component *(mS22) of small mitoribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Azfi_s0068.g036323 No alias component *(mS22) of small mitoribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Ehy_g21755 No alias component *(mS22) of small mitoribosomal-subunit... 0.02 OrthoFinder output from all 47 species
GSVIVT01019613001 No alias No description available 0.03 OrthoFinder output from all 47 species
LOC_Os07g20150.1 LOC_Os07g20150 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Msp_g14874 No alias component *(mS22) of small mitoribosomal-subunit... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0006412 translation IEA Interproscan
MF GO:0008168 methyltransferase activity IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0000213 tRNA-intron endonuclease activity IEP HCCA
BP GO:0000394 RNA splicing, via endonucleolytic cleavage and ligation IEP HCCA
BP GO:0001522 pseudouridine synthesis IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0004045 aminoacyl-tRNA hydrolase activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004519 endonuclease activity IEP HCCA
MF GO:0004521 endoribonuclease activity IEP HCCA
MF GO:0004540 ribonuclease activity IEP HCCA
MF GO:0004549 tRNA-specific ribonuclease activity IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
CC GO:0005840 ribosome IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006388 tRNA splicing, via endonucleolytic cleavage and ligation IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0008033 tRNA processing IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
MF GO:0009982 pseudouridine synthase activity IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016788 hydrolase activity, acting on ester bonds IEP HCCA
MF GO:0016866 intramolecular transferase activity IEP HCCA
MF GO:0016892 endoribonuclease activity, producing 3'-phosphomonoesters IEP HCCA
MF GO:0016894 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 3'-phosphomonoesters IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
MF GO:0052689 carboxylic ester hydrolase activity IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR015324 Ribosomal_Rsm22-like 59 134
No external refs found!