Description : not classified & original description: none
Gene families : OG0005774 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005774_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: Sam_g10527 | |
Cluster | HCCA: Cluster_146 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AT1G64600 | No alias | methyltransferases;copper ion binding | 0.03 | OrthoFinder output from all 47 species | |
Adi_g008711 | No alias | component *(mS22) of small mitoribosomal-subunit... | 0.03 | OrthoFinder output from all 47 species | |
Als_g12396 | No alias | component *(mS22) of small mitoribosomal-subunit... | 0.04 | OrthoFinder output from all 47 species | |
Aob_g07347 | No alias | component *(mS22) of small mitoribosomal-subunit... | 0.03 | OrthoFinder output from all 47 species | |
Azfi_s0068.g036323 | No alias | component *(mS22) of small mitoribosomal-subunit... | 0.03 | OrthoFinder output from all 47 species | |
Ehy_g21755 | No alias | component *(mS22) of small mitoribosomal-subunit... | 0.02 | OrthoFinder output from all 47 species | |
GSVIVT01019613001 | No alias | No description available | 0.03 | OrthoFinder output from all 47 species | |
LOC_Os07g20150.1 | LOC_Os07g20150 | no hits & (original description: none) | 0.03 | OrthoFinder output from all 47 species | |
Msp_g14874 | No alias | component *(mS22) of small mitoribosomal-subunit... | 0.04 | OrthoFinder output from all 47 species |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
BP | GO:0006412 | translation | IEA | Interproscan |
MF | GO:0008168 | methyltransferase activity | IEA | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0000213 | tRNA-intron endonuclease activity | IEP | HCCA |
BP | GO:0000394 | RNA splicing, via endonucleolytic cleavage and ligation | IEP | HCCA |
BP | GO:0001522 | pseudouridine synthesis | IEP | HCCA |
MF | GO:0003723 | RNA binding | IEP | HCCA |
MF | GO:0003735 | structural constituent of ribosome | IEP | HCCA |
MF | GO:0004045 | aminoacyl-tRNA hydrolase activity | IEP | HCCA |
MF | GO:0004386 | helicase activity | IEP | HCCA |
MF | GO:0004518 | nuclease activity | IEP | HCCA |
MF | GO:0004519 | endonuclease activity | IEP | HCCA |
MF | GO:0004521 | endoribonuclease activity | IEP | HCCA |
MF | GO:0004540 | ribonuclease activity | IEP | HCCA |
MF | GO:0004549 | tRNA-specific ribonuclease activity | IEP | HCCA |
MF | GO:0005198 | structural molecule activity | IEP | HCCA |
CC | GO:0005840 | ribosome | IEP | HCCA |
BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | HCCA |
BP | GO:0006388 | tRNA splicing, via endonucleolytic cleavage and ligation | IEP | HCCA |
BP | GO:0006399 | tRNA metabolic process | IEP | HCCA |
BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | HCCA |
BP | GO:0008033 | tRNA processing | IEP | HCCA |
BP | GO:0008380 | RNA splicing | IEP | HCCA |
BP | GO:0009451 | RNA modification | IEP | HCCA |
MF | GO:0009982 | pseudouridine synthase activity | IEP | HCCA |
BP | GO:0016070 | RNA metabolic process | IEP | HCCA |
MF | GO:0016788 | hydrolase activity, acting on ester bonds | IEP | HCCA |
MF | GO:0016866 | intramolecular transferase activity | IEP | HCCA |
MF | GO:0016892 | endoribonuclease activity, producing 3'-phosphomonoesters | IEP | HCCA |
MF | GO:0016894 | endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 3'-phosphomonoesters | IEP | HCCA |
BP | GO:0034470 | ncRNA processing | IEP | HCCA |
BP | GO:0034660 | ncRNA metabolic process | IEP | HCCA |
CC | GO:0043226 | organelle | IEP | HCCA |
CC | GO:0043228 | non-membrane-bounded organelle | IEP | HCCA |
CC | GO:0043229 | intracellular organelle | IEP | HCCA |
CC | GO:0043232 | intracellular non-membrane-bounded organelle | IEP | HCCA |
BP | GO:0046483 | heterocycle metabolic process | IEP | HCCA |
MF | GO:0052689 | carboxylic ester hydrolase activity | IEP | HCCA |
BP | GO:0090304 | nucleic acid metabolic process | IEP | HCCA |
MF | GO:0140098 | catalytic activity, acting on RNA | IEP | HCCA |
MF | GO:0140101 | catalytic activity, acting on a tRNA | IEP | HCCA |
MF | GO:0140640 | catalytic activity, acting on a nucleic acid | IEP | HCCA |
BP | GO:1901360 | organic cyclic compound metabolic process | IEP | HCCA |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR015324 | Ribosomal_Rsm22-like | 59 | 134 |
No external refs found! |