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  5. Sam_g10281

Sam_g10281


Description : component *(PsbB/CP47) of PS-II reaction center complex & original description: none


Gene families : OG0004191 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004191_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g10281
Cluster HCCA: Cluster_83

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00585p00000100 PSBB,... Photosynthesis.photophosphorylation.photosystem II.PS-II... 0.04 OrthoFinder output from all 47 species
ATCG00680 PSBB photosystem II reaction center protein B 0.09 OrthoFinder output from all 47 species
Adi_g005798 PSBB component *(PsbB/CP47) of PS-II reaction center complex... 0.03 OrthoFinder output from all 47 species
Aev_g08305 PSBB component *(PsbB/CP47) of PS-II reaction center complex... 0.09 OrthoFinder output from all 47 species
Als_g00826 PSBB component *(PsbB/CP47) of PS-II reaction center complex... 0.08 OrthoFinder output from all 47 species
Aob_g02288 PSBB component *(PsbB/CP47) of PS-II reaction center complex... 0.05 OrthoFinder output from all 47 species
Aspi01Gene32261.t1 PSBB, Aspi01Gene32261 component *(PsbB/CP47) of PS-II reaction center complex... 0.04 OrthoFinder output from all 47 species
Cba_g02603 PSBB component *(PsbB/CP47) of PS-II reaction center complex... 0.12 OrthoFinder output from all 47 species
Ceric.02G013400.1 PSBB, Ceric.02G013400 component *(PsbB/CP47) of PS-II reaction center complex... 0.04 OrthoFinder output from all 47 species
Ceric.02G015500.1 PSBB, Ceric.02G015500 component *(PsbB/CP47) of PS-II reaction center complex... 0.04 OrthoFinder output from all 47 species
Ceric.05G041400.1 PSBB, Ceric.05G041400 component *(PsbB/CP47) of PS-II reaction center complex... 0.1 OrthoFinder output from all 47 species
Ceric.05G051100.1 PSBB, Ceric.05G051100 component *(PsbB/CP47) of PS-II reaction center complex... 0.08 OrthoFinder output from all 47 species
Ceric.14G009600.1 PSBB, Ceric.14G009600 not classified & original description: pacid=50634641... 0.07 OrthoFinder output from all 47 species
Ceric.19G038500.1 PSBB, Ceric.19G038500 not classified & original description: pacid=50576616... 0.03 OrthoFinder output from all 47 species
Ceric.1Z019400.1 PSBB, Ceric.1Z019400 component *(PsbB/CP47) of PS-II reaction center complex... 0.08 OrthoFinder output from all 47 species
Ceric.1Z021200.1 PSBB, Ceric.1Z021200 component *(PsbB/CP47) of PS-II reaction center complex... 0.11 OrthoFinder output from all 47 species
Ceric.1Z162800.1 PSBB, Ceric.1Z162800 component *(PsbB/CP47) of PS-II reaction center complex... 0.08 OrthoFinder output from all 47 species
Ceric.30G038800.1 PSBB, Ceric.30G038800 not classified & original description: pacid=50609266... 0.03 OrthoFinder output from all 47 species
Ceric.38G008000.1 PSBB, Ceric.38G008000 component *(PsbB/CP47) of PS-II reaction center complex... 0.1 OrthoFinder output from all 47 species
Dac_g09466 PSBB component *(PsbB/CP47) of PS-II reaction center complex... 0.06 OrthoFinder output from all 47 species
Dcu_g21021 PSBB component *(PsbB/CP47) of PS-II reaction center complex... 0.11 OrthoFinder output from all 47 species
Dde_g03407 PSBB component *(PsbB/CP47) of PS-II reaction center complex... 0.03 OrthoFinder output from all 47 species
GSVIVT01006503001 PSBB Photosystem II CP47 reaction center protein OS=Phaseolus vulgaris 0.05 OrthoFinder output from all 47 species
Gb_23567 PSBB component PsbB/CP47 of PS-II reaction center complex 0.06 OrthoFinder output from all 47 species
Gb_27294 PSBB Photosystem II CP47 reaction center protein OS=Cycas... 0.06 OrthoFinder output from all 47 species
Gb_40206 PSBB Photosystem II CP47 reaction center protein... 0.03 OrthoFinder output from all 47 species
LOC_Os06g39708.1 PSBB, LOC_Os06g39708 component PsbB/CP47 of PS-II reaction center complex 0.12 OrthoFinder output from all 47 species
LOC_Os09g04680.1 PSBB, LOC_Os09g04680 Photosystem II CP47 reaction center protein OS=Oryza... 0.11 OrthoFinder output from all 47 species
LOC_Os10g21310.1 PSBB, LOC_Os10g21310 component PsbB/CP47 of PS-II reaction center complex 0.13 OrthoFinder output from all 47 species
LOC_Os12g10600.1 PSBB, LOC_Os12g10600 Photosystem II CP47 reaction center protein OS=Oryza... 0.03 OrthoFinder output from all 47 species
Lfl_g04892 PSBB component *(PsbB/CP47) of PS-II reaction center complex... 0.08 OrthoFinder output from all 47 species
Mpzg01020.1 PSBB component PsbB/CP47 of PS-II reaction center complex 0.08 OrthoFinder output from all 47 species
Msp_g21439 PSBB component *(PsbB/CP47) of PS-II reaction center complex... 0.04 OrthoFinder output from all 47 species
Ore_g02100 PSBB component *(PsbB/CP47) of PS-II reaction center complex... 0.12 OrthoFinder output from all 47 species
Pir_g05119 PSBB component *(PsbB/CP47) of PS-II reaction center complex... 0.06 OrthoFinder output from all 47 species
Pnu_g00696 PSBB component *(PsbB/CP47) of PS-II reaction center complex... 0.04 OrthoFinder output from all 47 species
Pp3c21_5650V3.1 PETB, Pp3c21_5650 photosynthetic electron transfer B 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0004.g002254 PSBB not classified & original description: CDS=1-408 0.06 OrthoFinder output from all 47 species
Smo137729 PSBB Photosystem II CP47 reaction center protein OS=Angiopteris evecta 0.11 OrthoFinder output from all 47 species
Solyc00g500024.1.1 PSBB, Solyc00g500024 component PsbB/CP47 of PS-II reaction center complex 0.1 OrthoFinder output from all 47 species
Solyc00g500071.1.1 PSBB, Solyc00g500071 component PsbB/CP47 of PS-II reaction center complex 0.1 OrthoFinder output from all 47 species
Spa_g04296 PSBB component *(PsbB/CP47) of PS-II reaction center complex... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0009521 photosystem IEA Interproscan
BP GO:0009767 photosynthetic electron transport chain IEA Interproscan
CC GO:0016020 membrane IEA Interproscan
MF GO:0016168 chlorophyll binding IEA Interproscan
BP GO:0019684 photosynthesis, light reaction IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000287 magnesium ion binding IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
MF GO:0009055 electron transfer activity IEP HCCA
CC GO:0009579 thylakoid IEP HCCA
BP GO:0009772 photosynthetic electron transport in photosystem II IEP HCCA
BP GO:0015074 DNA integration IEP HCCA
BP GO:0015979 photosynthesis IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
MF GO:0016829 lyase activity IEP HCCA
MF GO:0016830 carbon-carbon lyase activity IEP HCCA
MF GO:0016831 carboxy-lyase activity IEP HCCA
MF GO:0016984 ribulose-bisphosphate carboxylase activity IEP HCCA
MF GO:0045156 electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity IEP HCCA
InterPro domains Description Start Stop
IPR000932 PS_antenna-like 33 505
No external refs found!