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  5. Sam_g08951

Sam_g08951


Description : component *(MSH6) of MSH2-x mismatch repair heterodimers & original description: none


Gene families : OG0001663 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001663_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g08951

Target Alias Description ECC score Gene Family Method Actions
Dde_g22945 MSH6-1, ATMSH6, MSH6 component *(MSH6) of MSH2-x mismatch repair heterodimers... 0.03 OrthoFinder output from all 47 species
Lfl_g09319 MSH7, ATMSH7, MSH6-2 component *(MSH7) of MSH2-x mismatch repair heterodimers... 0.03 OrthoFinder output from all 47 species
MA_14434g0010 MSH6-1, ATMSH6, MSH6 DNA mismatch repair protein MSH6 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Pir_g66010 MSH6-1, ATMSH6, MSH6 component *(MSH6) of MSH2-x mismatch repair heterodimers... 0.02 OrthoFinder output from all 47 species
Tin_g08443 MSH7, ATMSH7, MSH6-2 component *(MSH7) of MSH2-x mismatch repair heterodimers... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
BP GO:0006298 mismatch repair IEA Interproscan
MF GO:0030983 mismatched DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEP HCCA
MF GO:0003725 double-stranded RNA binding IEP HCCA
InterPro domains Description Start Stop
IPR007695 DNA_mismatch_repair_MutS-lik_N 413 526
IPR007696 DNA_mismatch_repair_MutS_core 743 1058
IPR000432 DNA_mismatch_repair_MutS_C 1121 1312
IPR007860 DNA_mmatch_repair_MutS_con_dom 554 701
IPR007861 DNA_mismatch_repair_MutS_clamp 928 1011
No external refs found!