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  5. Sam_g08939

Sam_g08939


Description : component *(DDW) of ISWI chromatin remodeling complex & original description: none


Gene families : OG0002374 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002374_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g08939

Target Alias Description ECC score Gene Family Method Actions
AT5G08630 No alias DDT domain-containing protein 0.03 OrthoFinder output from all 47 species
Adi_g079726 No alias component *(DDW) of ISWI chromatin remodeling complex &... 0.02 OrthoFinder output from all 47 species
Aev_g17651 No alias component *(DDW) of ISWI chromatin remodeling complex &... 0.02 OrthoFinder output from all 47 species
Aob_g02275 No alias component *(DDW) of ISWI chromatin remodeling complex &... 0.02 OrthoFinder output from all 47 species
Aspi01Gene44900.t1 Aspi01Gene44900 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g46706 No alias component *(DDW) of ISWI chromatin remodeling complex &... 0.03 OrthoFinder output from all 47 species
Ehy_g06118 No alias component *(DDW) of ISWI chromatin remodeling complex &... 0.03 OrthoFinder output from all 47 species
LOC_Os02g35100.1 LOC_Os02g35100 no hits & (original description: none) 0.01 OrthoFinder output from all 47 species
Lfl_g28249 No alias component *(DDW) of ISWI chromatin remodeling complex &... 0.03 OrthoFinder output from all 47 species
Mp1g09390.1 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Msp_g15996 No alias component *(DDW) of ISWI chromatin remodeling complex &... 0.02 OrthoFinder output from all 47 species
Nbi_g39114 No alias component *(DDW) of ISWI chromatin remodeling complex &... 0.02 OrthoFinder output from all 47 species
Smo107792 No alias No description available 0.03 OrthoFinder output from all 47 species
Solyc05g056530.4.1 Solyc05g056530 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Spa_g17984 No alias component *(DDW) of ISWI chromatin remodeling complex &... 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0002097 tRNA wobble base modification IEP HCCA
BP GO:0002098 tRNA wobble uridine modification IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003682 chromatin binding IEP HCCA
MF GO:0003916 DNA topoisomerase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006265 DNA topological change IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006400 tRNA modification IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0008033 tRNA processing IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
BP GO:0017038 protein import IEP HCCA
CC GO:0033588 elongator holoenzyme complex IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0071103 DNA conformation change IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR018501 DDT_dom 304 360
IPR013136 WSTF_Acf1_Cbp146 24 121
IPR028941 WHIM2_dom 563 629
No external refs found!