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  5. Sam_g08903

Sam_g08903


Description : component *(uL16) of large ribosomal-subunit (LSU) proteome & original description: none


Gene families : OG0001847 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001847_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g08903

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00072p00080890 RPL10B,... Protein biosynthesis.cytosolic ribosome.large subunit... 0.06 OrthoFinder output from all 47 species
AT1G14320 SAC52, RPL10, RPL10A Ribosomal protein L16p/L10e family protein 0.07 OrthoFinder output from all 47 species
Als_g26652 RPL10B component *(uL16) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Als_g51397 RPL10B not classified & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0001.g000052 RPL10B component *(uL16) of large ribosomal-subunit (LSU)... 0.06 OrthoFinder output from all 47 species
Azfi_s0267.g061009 RPL10B component *(uL16) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Ceric.10G071500.1 RPL10B, Ceric.10G071500 component *(uL16) of large ribosomal-subunit (LSU)... 0.06 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001424.5 RPL10C, SAG24 Protein biosynthesis.cytosolic ribosome.large subunit... 0.04 OrthoFinder output from all 47 species
GSVIVT01001137001 RPL10B 60S ribosomal protein L10 OS=Vitis riparia 0.04 OrthoFinder output from all 47 species
Gb_06067 RPL10B component RPL10 of LSU proteome component 0.05 OrthoFinder output from all 47 species
LOC_Os11g11390.1 RPL10B, LOC_Os11g11390 component RPL10 of LSU proteome component 0.02 OrthoFinder output from all 47 species
MA_17326g0010 SAC52, RPL10, RPL10A component RPL10 of LSU proteome component 0.06 OrthoFinder output from all 47 species
Mp4g23990.1 RPL10B component RPL10 of LSU proteome component 0.07 OrthoFinder output from all 47 species
Pp3c11_4130V3.1 RPL10B, Pp3c11_4130 Ribosomal protein L16p/L10e family protein 0.02 OrthoFinder output from all 47 species
Pp3c2_29600V3.1 RPL10B, Pp3c2_29600 Ribosomal protein L16p/L10e family protein 0.03 OrthoFinder output from all 47 species
Pp3c7_22400V3.1 RPL10B, Pp3c7_22400 Ribosomal protein L16p/L10e family protein 0.03 OrthoFinder output from all 47 species
Ppi_g26211 RPL10B component *(uL16) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Ppi_g62311 RPL10B component *(uL16) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Solyc06g007520.4.1 RPL10B, Solyc06g007520 component RPL10 of LSU proteome component 0.07 OrthoFinder output from all 47 species
Solyc06g082650.4.1 SAC52, RPL10,... component RPL10 of LSU proteome component 0.07 OrthoFinder output from all 47 species
Solyc06g082670.3.1 RPL10B, Solyc06g082670 component RPL10 of LSU proteome component 0.06 OrthoFinder output from all 47 species
Spa_g18494 RPL10B component *(uL16) of large ribosomal-subunit (LSU)... 0.06 OrthoFinder output from all 47 species
Spa_g51059 RPL10C, SAG24 component *(uL16) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Zm00001e004933_P001 RPL10B, Zm00001e004933 component RPL10 of LSU proteome component 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004190 aspartic-type endopeptidase activity IEP HCCA
CC GO:0005634 nucleus IEP HCCA
CC GO:0005839 proteasome core complex IEP HCCA
BP GO:0006508 proteolysis IEP HCCA
BP GO:0009719 response to endogenous stimulus IEP HCCA
BP GO:0009725 response to hormone IEP HCCA
BP GO:0010033 response to organic substance IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0042221 response to chemical IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
MF GO:0070001 aspartic-type peptidase activity IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
CC GO:1902494 catalytic complex IEP HCCA
InterPro domains Description Start Stop
IPR016180 Ribosomal_L10e/L16 12 166
No external refs found!