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  5. Sam_g08743

Sam_g08743


Description : component *(Snu13) of snoRNP rRNA methylation complex & original description: none


Gene families : OG0002183 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002183_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g08743

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00029p00103630 evm_27.TU.AmTr_v1... RNA processing.RNA modification.rRNA/tRNA... 0.02 OrthoFinder output from all 47 species
AMTR_s00043p00189790 evm_27.TU.AmTr_v1... RNA processing.RNA modification.rRNA/tRNA... 0.05 OrthoFinder output from all 47 species
AT4G12600 No alias Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 0.1 OrthoFinder output from all 47 species
AT5G20160 No alias Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 0.11 OrthoFinder output from all 47 species
Als_g09839 No alias component *(Snu13) of snoRNP rRNA methylation complex &... 0.03 OrthoFinder output from all 47 species
Als_g25287 No alias component *(Snu13) of snoRNP rRNA methylation complex &... 0.03 OrthoFinder output from all 47 species
Azfi_s0280.g062289 No alias component *(Snu13) of snoRNP rRNA methylation complex &... 0.04 OrthoFinder output from all 47 species
Cba_g04985 No alias component *(Snu13) of snoRNP rRNA methylation complex &... 0.03 OrthoFinder output from all 47 species
Cba_g29914 No alias component *(Snu13) of snoRNP rRNA methylation complex &... 0.03 OrthoFinder output from all 47 species
Ceric.03G070800.1 Ceric.03G070800 component *(Snu13) of snoRNP rRNA methylation complex &... 0.07 OrthoFinder output from all 47 species
Cre06.g249250 No alias RNA processing.RNA modification.rRNA/tRNA... 0.09 OrthoFinder output from all 47 species
Dac_g02506 No alias component *(Snu13) of snoRNP rRNA methylation complex &... 0.09 OrthoFinder output from all 47 species
Dac_g29609 No alias component *(Snu13) of snoRNP rRNA methylation complex &... 0.04 OrthoFinder output from all 47 species
Dcu_g15283 No alias component *(Snu13) of snoRNP rRNA methylation complex &... 0.03 OrthoFinder output from all 47 species
GSVIVT01015520001 No alias RNA processing.RNA modification.rRNA/tRNA... 0.07 OrthoFinder output from all 47 species
GSVIVT01016438001 No alias RNA processing.RNA modification.rRNA/tRNA... 0.02 OrthoFinder output from all 47 species
Gb_01849 No alias protein factor NHP2L1/SNU13 of U4/U6 small nuclear... 0.08 OrthoFinder output from all 47 species
Gb_14400 No alias protein factor NHP2L1/SNU13 of U4/U6 small nuclear... 0.03 OrthoFinder output from all 47 species
LOC_Os03g13800.1 LOC_Os03g13800 protein factor NHP2L1/SNU13 of U4/U6 small nuclear... 0.11 OrthoFinder output from all 47 species
LOC_Os10g03540.1 LOC_Os10g03540 protein factor NHP2L1/SNU13 of U4/U6 small nuclear... 0.02 OrthoFinder output from all 47 species
MA_16906g0010 No alias protein factor NHP2L1/SNU13 of U4/U6 small nuclear... 0.11 OrthoFinder output from all 47 species
MA_433779g0010 No alias protein factor NHP2L1/SNU13 of U4/U6 small nuclear... 0.08 OrthoFinder output from all 47 species
Pir_g09212 No alias component *(Snu13) of snoRNP rRNA methylation complex &... 0.05 OrthoFinder output from all 47 species
Pp3c17_18010V3.1 Pp3c17_18010 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 0.02 OrthoFinder output from all 47 species
Solyc09g011420.3.1 Solyc09g011420 protein factor NHP2L1/SNU13 of U4/U6 small nuclear... 0.03 OrthoFinder output from all 47 species
Spa_g56417 No alias component *(Snu13) of snoRNP rRNA methylation complex &... 0.06 OrthoFinder output from all 47 species
Tin_g30682 No alias component *(Snu13) of snoRNP rRNA methylation complex &... 0.07 OrthoFinder output from all 47 species
Zm00001e001004_P001 Zm00001e001004 protein factor NHP2L1/SNU13 of U4/U6 small nuclear... 0.05 OrthoFinder output from all 47 species
Zm00001e038611_P002 Zm00001e038611 protein factor NHP2L1/SNU13 of U4/U6 small nuclear... 0.15 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005840 ribosome IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0008104 protein localization IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0015031 protein transport IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
MF GO:0019899 enzyme binding IEP HCCA
MF GO:0031267 small GTPase binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
MF GO:0051020 GTPase binding IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR004038 Ribosomal_L7Ae/L30e/S12e/Gad45 68 154
No external refs found!