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  5. Sam_g08624

Sam_g08624


Description : not classified & original description: none


Gene families : OG0000833 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000833_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g08624
Cluster HCCA: Cluster_29

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00030p00236350 evm_27.TU.AmTr_v1... RNA processing.RNA decay.deadenylation-dependent... 0.02 OrthoFinder output from all 47 species
Aev_g07107 No alias deadenylase component *(CAF1) of mRNA deadenylation... 0.02 OrthoFinder output from all 47 species
Als_g01479 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g37509 No alias deadenylase component *(CAF1) of mRNA deadenylation... 0.02 OrthoFinder output from all 47 species
Als_g47204 No alias deadenylase component *(CAF1) of mRNA deadenylation... 0.03 OrthoFinder output from all 47 species
Aob_g35125 No alias deadenylase component *(CAF1) of mRNA deadenylation... 0.02 OrthoFinder output from all 47 species
Aop_g01129 No alias deadenylase component *(CAF1) of mRNA deadenylation... 0.03 OrthoFinder output from all 47 species
Aop_g06045 No alias deadenylase component *(CAF1) of mRNA deadenylation... 0.03 OrthoFinder output from all 47 species
Aspi01Gene64156.t1 Aspi01Gene64156 deadenylase component *(CAF1) of mRNA deadenylation... 0.02 OrthoFinder output from all 47 species
Aspi01Gene68835.t1 Aspi01Gene68835 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g06366 No alias deadenylase component *(CAF1) of mRNA deadenylation... 0.04 OrthoFinder output from all 47 species
Cba_g08602 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g01208 No alias deadenylase component *(CAF1) of mRNA deadenylation... 0.02 OrthoFinder output from all 47 species
Dcu_g42851 No alias deadenylase component *(CAF1) of mRNA deadenylation... 0.02 OrthoFinder output from all 47 species
Dcu_g51611 No alias deadenylase component *(CAF1) of mRNA deadenylation... 0.05 OrthoFinder output from all 47 species
Ehy_g00624 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g03366 No alias deadenylase component *(CAF1) of mRNA deadenylation... 0.03 OrthoFinder output from all 47 species
Gb_19103 No alias deadenylase component CAF1 of CCR4-NOT complex 0.02 OrthoFinder output from all 47 species
LOC_Os02g55300.1 LOC_Os02g55300 Probable CCR4-associated factor 1 homolog 7... 0.02 OrthoFinder output from all 47 species
Lfl_g03678 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g24939 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_205414g0010 No alias Probable CCR4-associated factor 1 homolog 7... 0.02 OrthoFinder output from all 47 species
MA_2937g0010 No alias Probable CCR4-associated factor 1 homolog 7... 0.02 OrthoFinder output from all 47 species
Ore_g08887 No alias deadenylase component *(CAF1) of mRNA deadenylation... 0.02 OrthoFinder output from all 47 species
Ore_g13769 No alias deadenylase component *(CAF1) of mRNA deadenylation... 0.02 OrthoFinder output from all 47 species
Ore_g27312 No alias deadenylase component *(CAF1) of mRNA deadenylation... 0.03 OrthoFinder output from all 47 species
Solyc06g068410.3.1 Solyc06g068410 Probable CCR4-associated factor 1 homolog 7... 0.03 OrthoFinder output from all 47 species
Spa_g06339 No alias deadenylase component *(CAF1) of mRNA deadenylation... 0.03 OrthoFinder output from all 47 species
Tin_g02569 No alias deadenylase component *(CAF1) of mRNA deadenylation... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR006941 RNase_CAF1 17 136
No external refs found!