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  5. Sam_g08416

Sam_g08416


Description : component *(MCM6) of MCM replicative DNA helicase complex & original description: none


Gene families : OG0006617 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006617_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g08416
Cluster HCCA: Cluster_168

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00068p00194270 MCM6,... Cell cycle.interphase.DNA replication.preinitiation.MCM... 0.07 OrthoFinder output from all 47 species
AT5G44635 MCM6 minichromosome maintenance (MCM2/3/5) family protein 0.02 OrthoFinder output from all 47 species
Adi_g060593 MCM6 component *(MCM6) of MCM replicative DNA helicase... 0.02 OrthoFinder output from all 47 species
Ala_g26836 MCM6 component *(MCM6) of MCM replicative DNA helicase... 0.06 OrthoFinder output from all 47 species
Als_g05373 MCM6 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g06769 MCM6 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g39726 MCM6 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g08840 MCM6 component *(MCM6) of MCM replicative DNA helicase... 0.06 OrthoFinder output from all 47 species
Aspi01Gene04386.t1 MCM6, Aspi01Gene04386 component *(MCM6) of MCM replicative DNA helicase... 0.06 OrthoFinder output from all 47 species
Azfi_s0167.g054494 MCM6 component *(MCM6) of MCM replicative DNA helicase... 0.03 OrthoFinder output from all 47 species
Ceric.09G019700.1 MCM6, Ceric.09G019700 component *(MCM6) of MCM replicative DNA helicase... 0.05 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020918.5 MCM6 Cell cycle.interphase.DNA replication.preinitiation.MCM... 0.04 OrthoFinder output from all 47 species
Cre03.g178650 MCM6 Cell cycle.interphase.DNA replication.preinitiation.MCM... 0.05 OrthoFinder output from all 47 species
Dac_g15310 MCM6 component *(MCM6) of MCM replicative DNA helicase... 0.09 OrthoFinder output from all 47 species
Dcu_g41685 MCM6 component *(MCM6) of MCM replicative DNA helicase... 0.03 OrthoFinder output from all 47 species
Ehy_g17341 MCM6 component *(MCM6) of MCM replicative DNA helicase... 0.02 OrthoFinder output from all 47 species
GSVIVT01003253001 MCM6 DNA replication licensing factor MCM6 OS=Arabidopsis thaliana 0.05 OrthoFinder output from all 47 species
Gb_23970 MCM6 component MCM6 of MCM replicative DNA helicase complex 0.05 OrthoFinder output from all 47 species
LOC_Os05g14590.1 MCM6, LOC_Os05g14590 component MCM6 of MCM replicative DNA helicase complex 0.04 OrthoFinder output from all 47 species
Len_g31435 MCM6 component *(MCM6) of MCM replicative DNA helicase... 0.04 OrthoFinder output from all 47 species
MA_15713g0010 MCM6 component MCM6 of MCM replicative DNA helicase complex 0.05 OrthoFinder output from all 47 species
Mp4g14930.1 MCM6 component MCM6 of MCM replicative DNA helicase complex 0.05 OrthoFinder output from all 47 species
Msp_g06026 MCM6 component *(MCM6) of MCM replicative DNA helicase... 0.03 OrthoFinder output from all 47 species
Nbi_g01354 MCM6 component *(MCM6) of MCM replicative DNA helicase... 0.06 OrthoFinder output from all 47 species
Ppi_g04649 MCM6 component *(MCM6) of MCM replicative DNA helicase... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0016.g006902 MCM6 component *(MCM6) of MCM replicative DNA helicase... 0.06 OrthoFinder output from all 47 species
Spa_g10325 MCM6 component *(MCM6) of MCM replicative DNA helicase... 0.05 OrthoFinder output from all 47 species
Tin_g10680 MCM6 component *(MCM6) of MCM replicative DNA helicase... 0.06 OrthoFinder output from all 47 species
Zm00001e027149_P002 MCM6, Zm00001e027149 component MCM6 of MCM replicative DNA helicase complex 0.04 OrthoFinder output from all 47 species
Zm00001e031306_P002 MCM6, Zm00001e031306 component MCM6 of MCM replicative DNA helicase complex 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
BP GO:0032508 DNA duplex unwinding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003872 6-phosphofructokinase activity IEP HCCA
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP HCCA
MF GO:0004650 polygalacturonase activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
BP GO:0005975 carbohydrate metabolic process IEP HCCA
BP GO:0006090 pyruvate metabolic process IEP HCCA
BP GO:0006096 glycolytic process IEP HCCA
BP GO:0006165 nucleoside diphosphate phosphorylation IEP HCCA
BP GO:0006757 ATP generation from ADP IEP HCCA
MF GO:0008443 phosphofructokinase activity IEP HCCA
BP GO:0009132 nucleoside diphosphate metabolic process IEP HCCA
BP GO:0009135 purine nucleoside diphosphate metabolic process IEP HCCA
BP GO:0009179 purine ribonucleoside diphosphate metabolic process IEP HCCA
BP GO:0009185 ribonucleoside diphosphate metabolic process IEP HCCA
BP GO:0016052 carbohydrate catabolic process IEP HCCA
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP HCCA
MF GO:0019200 carbohydrate kinase activity IEP HCCA
BP GO:0032787 monocarboxylic acid metabolic process IEP HCCA
BP GO:0046031 ADP metabolic process IEP HCCA
BP GO:0046939 nucleotide phosphorylation IEP HCCA
MF GO:0051287 NAD binding IEP HCCA
InterPro domains Description Start Stop
IPR027925 MCM_N 18 120
IPR033762 MCM_OB 126 255
IPR001208 MCM_dom 342 564
IPR041562 MCM_lid 579 663
IPR041024 Mcm6_C 719 834
No external refs found!