Sam_g08319

Description : subunit beta2 of coat protein complex & original description: none

Gene families : OG0002111 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002111_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Sam_g08319

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00142p00013680	evm_27.TU.AmTr_v1...	Vesicle trafficking.Coat protein I (COPI) coatomer...	0.02	OrthoFinder output from all 47 species
AT1G79990	No alias	structural molecules	0.03	OrthoFinder output from all 47 species
AT3G15980	No alias	Coatomer, beta' subunit	0.03	OrthoFinder output from all 47 species
Ala_g02602	No alias	subunit beta2 of coat protein complex & original...	0.03	OrthoFinder output from all 47 species
Als_g04780	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aob_g06720	No alias	subunit beta2 of coat protein complex & original...	0.03	OrthoFinder output from all 47 species
Azfi_s0001.g000608	No alias	subunit beta2 of coat protein complex & original...	0.02	OrthoFinder output from all 47 species
Cre02.g118500	No alias	Vesicle trafficking.Coat protein I (COPI) coatomer...	0.02	OrthoFinder output from all 47 species
Dac_g05778	No alias	subunit beta2 of coat protein complex & original...	0.02	OrthoFinder output from all 47 species
Dcu_g04083	No alias	subunit beta2 of coat protein complex & original...	0.02	OrthoFinder output from all 47 species
Dde_g02366	No alias	subunit beta2 of coat protein complex & original...	0.02	OrthoFinder output from all 47 species
GSVIVT01017121001	No alias	Vesicle trafficking.Coat protein I (COPI) coatomer...	0.02	OrthoFinder output from all 47 species
LOC_Os02g11840.1	LOC_Os02g11840	subunit beta2 of coat protein complex	0.03	OrthoFinder output from all 47 species
LOC_Os06g05180.3	LOC_Os06g05180	Coatomer subunit beta-1 OS=Oryza sativa subsp. japonica...	0.02	OrthoFinder output from all 47 species
MA_10436677g0010	No alias	Coatomer subunit beta-3 OS=Arabidopsis thaliana...	0.02	OrthoFinder output from all 47 species
Ore_g10228	No alias	subunit beta2 of coat protein complex & original...	0.03	OrthoFinder output from all 47 species
Pp3c14_8280V3.1	Pp3c14_8280	Coatomer, beta\ subunit	0.02	OrthoFinder output from all 47 species
Solyc03g120270.4.1	Solyc03g120270	subunit beta2 of coat protein complex	0.02	OrthoFinder output from all 47 species
Solyc06g066730.3.1	Solyc06g066730	subunit beta2 of coat protein complex	0.02	OrthoFinder output from all 47 species
Solyc12g043000.3.1	Solyc12g043000	subunit beta2 of coat protein complex	0.02	OrthoFinder output from all 47 species
Spa_g50190	No alias	subunit beta2 of coat protein complex & original...	0.02	OrthoFinder output from all 47 species
Zm00001e014494_P001	Zm00001e014494	subunit beta2 of coat protein complex	0.02	OrthoFinder output from all 47 species
Zm00001e024969_P001	Zm00001e024969	subunit beta2 of coat protein complex	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005198	structural molecule activity	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006810	transport	None	Extended
BP	GO:0006886	intracellular protein transport	IEA	Interproscan
BP	GO:0008104	protein localization	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0015031	protein transport	None	Extended
BP	GO:0016192	vesicle-mediated transport	IEA	Interproscan
CC	GO:0030117	membrane coat	IEA	Interproscan
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0033036	macromolecule localization	None	Extended
BP	GO:0045184	establishment of protein localization	None	Extended
BP	GO:0046907	intracellular transport	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0051641	cellular localization	None	Extended
BP	GO:0051649	establishment of localization in cell	None	Extended
BP	GO:0070727	cellular macromolecule localization	None	Extended
BP	GO:0071702	organic substance transport	None	Extended
BP	GO:0071705	nitrogen compound transport	None	Extended
CC	GO:0098796	membrane protein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003755	peptidyl-prolyl cis-trans isomerase activity	IEP	HCCA
MF	GO:0005515	protein binding	IEP	HCCA
BP	GO:0006066	alcohol metabolic process	IEP	HCCA
BP	GO:0009056	catabolic process	IEP	HCCA
BP	GO:0016311	dephosphorylation	IEP	HCCA
MF	GO:0016853	isomerase activity	IEP	HCCA
MF	GO:0016859	cis-trans isomerase activity	IEP	HCCA
BP	GO:0019637	organophosphate metabolic process	IEP	HCCA
BP	GO:0019751	polyol metabolic process	IEP	HCCA
BP	GO:0043647	inositol phosphate metabolic process	IEP	HCCA
BP	GO:0044262	cellular carbohydrate metabolic process	IEP	HCCA
BP	GO:0044282	small molecule catabolic process	IEP	HCCA
BP	GO:0046164	alcohol catabolic process	IEP	HCCA
BP	GO:0046174	polyol catabolic process	IEP	HCCA
BP	GO:0046434	organophosphate catabolic process	IEP	HCCA
BP	GO:0046838	phosphorylated carbohydrate dephosphorylation	IEP	HCCA
BP	GO:0046855	inositol phosphate dephosphorylation	IEP	HCCA
BP	GO:0071545	inositol phosphate catabolic process	IEP	HCCA
BP	GO:1901575	organic substance catabolic process	IEP	HCCA
BP	GO:1901615	organic hydroxy compound metabolic process	IEP	HCCA
BP	GO:1901616	organic hydroxy compound catabolic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001680	WD40_repeat	91	127
IPR001680	WD40_repeat	132	171
IPR001680	WD40_repeat	220	256
IPR001680	WD40_repeat	177	215
IPR001680	WD40_repeat	59	85
IPR006692	Coatomer_WD-assoc_reg	319	762

External Links

No external refs found!

Sam_g08319

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation