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  5. Sam_g08275

Sam_g08275


Description : protein involved in PS-II assembly *(Psb32) & original description: none


Gene families : OG0007030 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007030_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g08275
Cluster HCCA: Cluster_7

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00025p00126870 TLP18.3,... Photosynthesis.photophosphorylation.photosystem... 0.14 OrthoFinder output from all 47 species
AT1G54780 TLP18.3 thylakoid lumen 18.3 kDa protein 0.1 OrthoFinder output from all 47 species
Adi_g001945 TLP18.3 protein involved in PS-II assembly *(Psb32) & original... 0.13 OrthoFinder output from all 47 species
Aev_g07030 TLP18.3 protein involved in PS-II assembly *(Psb32) & original... 0.02 OrthoFinder output from all 47 species
Ala_g01414 TLP18.3 protein involved in PS-II assembly *(Psb32) & original... 0.1 OrthoFinder output from all 47 species
Als_g32115 TLP18.3 protein involved in PS-II assembly *(Psb32) & original... 0.07 OrthoFinder output from all 47 species
Aob_g07689 TLP18.3 protein involved in PS-II assembly *(Psb32) & original... 0.03 OrthoFinder output from all 47 species
Aop_g08442 TLP18.3 protein involved in PS-II assembly *(Psb32) & original... 0.07 OrthoFinder output from all 47 species
Aspi01Gene13421.t1 TLP18.3, Aspi01Gene13421 protein involved in PS-II assembly *(Psb32) & original... 0.03 OrthoFinder output from all 47 species
Azfi_s0054.g033664 TLP18.3 protein involved in PS-II assembly *(Psb32) & original... 0.03 OrthoFinder output from all 47 species
Cba_g08697 TLP18.3 protein involved in PS-II assembly *(Psb32) & original... 0.06 OrthoFinder output from all 47 species
Ceric.05G027600.1 TLP18.3, Ceric.05G027600 protein involved in PS-II assembly *(Psb32) & original... 0.07 OrthoFinder output from all 47 species
Cre03.g182150 TLP18.3 Photosynthesis.photophosphorylation.photosystem... 0.11 OrthoFinder output from all 47 species
Dac_g09996 TLP18.3 protein involved in PS-II assembly *(Psb32) & original... 0.08 OrthoFinder output from all 47 species
Dcu_g00821 TLP18.3 protein involved in PS-II assembly *(Psb32) & original... 0.08 OrthoFinder output from all 47 species
Ehy_g06594 TLP18.3 protein involved in PS-II assembly *(Psb32) & original... 0.1 OrthoFinder output from all 47 species
GSVIVT01000004001 TLP18.3 Photosynthesis.photophosphorylation.photosystem... 0.13 OrthoFinder output from all 47 species
LOC_Os05g33280.1 TLP18.3, LOC_Os05g33280 Psb32 protein involved in PS-II assembly 0.1 OrthoFinder output from all 47 species
Len_g16675 TLP18.3 protein involved in PS-II assembly *(Psb32) & original... 0.05 OrthoFinder output from all 47 species
Lfl_g03752 TLP18.3 protein involved in PS-II assembly *(Psb32) & original... 0.04 OrthoFinder output from all 47 species
MA_10433010g0010 TLP18.3 Psb32 protein involved in PS-II assembly 0.04 OrthoFinder output from all 47 species
Mp8g16080.1 TLP18.3 Psb32 protein involved in PS-II assembly 0.18 OrthoFinder output from all 47 species
Msp_g03092 TLP18.3 protein involved in PS-II assembly *(Psb32) & original... 0.09 OrthoFinder output from all 47 species
Nbi_g17006 TLP18.3 protein involved in PS-II assembly *(Psb32) & original... 0.11 OrthoFinder output from all 47 species
Pir_g00411 TLP18.3 protein involved in PS-II assembly *(Psb32) & original... 0.08 OrthoFinder output from all 47 species
Pnu_g12645 TLP18.3 protein involved in PS-II assembly *(Psb32) & original... 0.07 OrthoFinder output from all 47 species
Ppi_g17567 TLP18.3 protein involved in PS-II assembly *(Psb32) & original... 0.06 OrthoFinder output from all 47 species
Sacu_v1.1_s0018.g007460 TLP18.3 protein involved in PS-II assembly *(Psb32) & original... 0.05 OrthoFinder output from all 47 species
Smo127459 TLP18.3 Photosynthesis.photophosphorylation.photosystem... 0.04 OrthoFinder output from all 47 species
Solyc01g098640.3.1 TLP18.3, Solyc01g098640 Psb32 protein involved in PS-II assembly 0.07 OrthoFinder output from all 47 species
Spa_g05586 TLP18.3 protein involved in PS-II assembly *(Psb32) & original... 0.13 OrthoFinder output from all 47 species
Spa_g05587 TLP18.3 protein involved in PS-II assembly *(Psb32) & original... 0.09 OrthoFinder output from all 47 species
Tin_g07118 TLP18.3 protein involved in PS-II assembly *(Psb32) & original... 0.08 OrthoFinder output from all 47 species
Zm00001e026820_P001 TLP18.3, Zm00001e026820 Psb32 protein involved in PS-II assembly 0.13 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004751 ribose-5-phosphate isomerase activity IEP HCCA
MF GO:0005507 copper ion binding IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
BP GO:0009052 pentose-phosphate shunt, non-oxidative branch IEP HCCA
MF GO:0009055 electron transfer activity IEP HCCA
CC GO:0009521 photosystem IEP HCCA
CC GO:0009522 photosystem I IEP HCCA
CC GO:0009523 photosystem II IEP HCCA
CC GO:0009654 photosystem II oxygen evolving complex IEP HCCA
BP GO:0010109 regulation of photosynthesis IEP HCCA
BP GO:0010207 photosystem II assembly IEP HCCA
MF GO:0010242 oxygen evolving activity IEP HCCA
BP GO:0015979 photosynthesis IEP HCCA
CC GO:0016020 membrane IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
MF GO:0016651 oxidoreductase activity, acting on NAD(P)H IEP HCCA
MF GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor IEP HCCA
MF GO:0016853 isomerase activity IEP HCCA
MF GO:0016860 intramolecular oxidoreductase activity IEP HCCA
MF GO:0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses IEP HCCA
CC GO:0019898 extrinsic component of membrane IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
CC GO:0034357 photosynthetic membrane IEP HCCA
BP GO:0042548 regulation of photosynthesis, light reaction IEP HCCA
BP GO:0042549 photosystem II stabilization IEP HCCA
CC GO:0042651 thylakoid membrane IEP HCCA
MF GO:0043169 cation binding IEP HCCA
BP GO:0043467 regulation of generation of precursor metabolites and energy IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
CC GO:0098796 membrane protein complex IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
CC GO:1902494 catalytic complex IEP HCCA
CC GO:1990204 oxidoreductase complex IEP HCCA
InterPro domains Description Start Stop
IPR007621 TPM_dom 116 240
No external refs found!