Sam_g08112

Description : component *(ELP1) of ELONGATOR transcription elongation complex & original description: none

Gene families : OG0006371 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006371_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Sam_g08112

Target	Alias	Description	ECC score	Gene Family Method
AT5G13680	ABO1, ELO2	IKI3 family protein	0.03	OrthoFinder output from all 47 species
Als_g01968	ABO1, ELO2	component *(ELP1) of ELONGATOR transcription elongation...	0.04	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000219.40	ABO1, ELO2	Elongator complex protein 1 OS=Arabidopsis thaliana	0.02	OrthoFinder output from all 47 species
Dac_g07052	ABO1, ELO2	component *(ELP1) of ELONGATOR transcription elongation...	0.02	OrthoFinder output from all 47 species
Dcu_g09746	ABO1, ELO2	component *(ELP1) of ELONGATOR transcription elongation...	0.03	OrthoFinder output from all 47 species
Ehy_g14344	ABO1, ELO2	component *(ELP1) of ELONGATOR transcription elongation...	0.03	OrthoFinder output from all 47 species
GSVIVT01016590001	ABO1, ELO2	RNA biosynthesis.RNA polymerase II-dependent...	0.03	OrthoFinder output from all 47 species
Gb_20472	ABO1, ELO2	component ELP1 of ELONGATOR transcription elongation complex	0.03	OrthoFinder output from all 47 species
LOC_Os07g37640.1	ABO1, ELO2,...	component ELP1 of ELONGATOR transcription elongation complex	0.03	OrthoFinder output from all 47 species
Lfl_g09984	ABO1, ELO2	component *(ELP1) of ELONGATOR transcription elongation...	0.03	OrthoFinder output from all 47 species
Mp2g09110.1	ABO1, ELO2	component ELP1 of ELONGATOR transcription elongation complex	0.02	OrthoFinder output from all 47 species
Nbi_g04458	ABO1, ELO2	component *(ELP1) of ELONGATOR transcription elongation...	0.02	OrthoFinder output from all 47 species
Pir_g16532	ABO1, ELO2	component *(ELP1) of ELONGATOR transcription elongation...	0.03	OrthoFinder output from all 47 species
Spa_g17971	ABO1, ELO2	component *(ELP1) of ELONGATOR transcription elongation...	0.03	OrthoFinder output from all 47 species
Zm00001e008063_P001	ABO1, ELO2,...	component ELP1 of ELONGATOR transcription elongation complex	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0002097	tRNA wobble base modification	None	Extended
BP	GO:0002098	tRNA wobble uridine modification	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006399	tRNA metabolic process	None	Extended
BP	GO:0006400	tRNA modification	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008033	tRNA processing	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009451	RNA modification	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
CC	GO:0033588	elongator holoenzyme complex	IEA	Interproscan
BP	GO:0034470	ncRNA processing	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034660	ncRNA metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
CC	GO:0140535	intracellular protein-containing complex	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
CC	GO:1902494	catalytic complex	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003723	RNA binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR006849	Elp1	1	155
IPR006849	Elp1	170	981

External Links

No external refs found!

Sam_g08112

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation