1. Home
  2. Species
  3. Salvinia molesta
  4. Sequence
  5. Sam_g07993

Sam_g07993


Description : small subunit *(NRPC15) of TFIIIf transcription factor module & original description: none


Gene families : OG0006193 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006193_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g07993
Cluster HCCA: Cluster_172

Target Alias Description ECC score Gene Family Method Actions
AT5G49530 No alias SIN-like family protein 0.02 OrthoFinder output from all 47 species
Als_g05692 No alias small subunit *(NRPC15) of TFIIIf transcription factor... 0.03 OrthoFinder output from all 47 species
Azfi_s0367.g067001 No alias small subunit *(NRPC15) of TFIIIf transcription factor... 0.02 OrthoFinder output from all 47 species
Dcu_g03047 No alias small subunit *(NRPC15) of TFIIIf transcription factor... 0.02 OrthoFinder output from all 47 species
Ehy_g02889 No alias small subunit *(NRPC15) of TFIIIf transcription factor... 0.03 OrthoFinder output from all 47 species
LOC_Os08g16780.1 LOC_Os08g16780 small subunit of TFIIIf transcription factor complex 0.02 OrthoFinder output from all 47 species
MA_179020g0010 No alias small subunit of TFIIIf transcription factor complex 0.02 OrthoFinder output from all 47 species
Ore_g40949 No alias small subunit *(NRPC15) of TFIIIf transcription factor... 0.03 OrthoFinder output from all 47 species
Smo418944 No alias RNA biosynthesis.RNA polymerase III-dependent... 0.01 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0005634 nucleus IEA Interproscan
BP GO:0006351 DNA-templated transcription IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0002161 aminoacyl-tRNA editing activity IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
MF GO:0051536 iron-sulfur cluster binding IEP HCCA
MF GO:0051540 metal cluster binding IEP HCCA
MF GO:0052689 carboxylic ester hydrolase activity IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
InterPro domains Description Start Stop
IPR006886 RNA_pol_III_Rpc5 41 448
No external refs found!