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  5. Sam_g07950

Sam_g07950


Description : component *(NOT4) of mRNA deadenylation CCR4-NOT complex & original description: none


Gene families : OG0003273 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003273_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g07950

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00023p00245540 evm_27.TU.AmTr_v1... RNA processing.RNA decay.deadenylation-dependent... 0.03 OrthoFinder output from all 47 species
AT5G60170 No alias RNA binding (RRM/RBD/RNP motifs) family protein 0.03 OrthoFinder output from all 47 species
Adi_g019442 No alias component *(NOT4) of mRNA deadenylation CCR4-NOT complex... 0.03 OrthoFinder output from all 47 species
Aop_g13675 No alias component *(NOT4) of mRNA deadenylation CCR4-NOT complex... 0.02 OrthoFinder output from all 47 species
GSVIVT01025102001 No alias RNA processing.RNA decay.deadenylation-dependent... 0.02 OrthoFinder output from all 47 species
Lfl_g34846 No alias component *(NOT4) of mRNA deadenylation CCR4-NOT complex... 0.02 OrthoFinder output from all 47 species
Ore_g37215 No alias component *(NOT4) of mRNA deadenylation CCR4-NOT complex... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0102.g019919 No alias component *(NOT4) of mRNA deadenylation CCR4-NOT complex... 0.04 OrthoFinder output from all 47 species
Solyc11g072590.3.1 Solyc11g072590 component NOT4 of mRNA deadenylation CCR4-NOT complex 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004497 monooxygenase activity IEP HCCA
MF GO:0004592 pantoate-beta-alanine ligase activity IEP HCCA
BP GO:0006354 DNA-templated transcription elongation IEP HCCA
BP GO:0006368 transcription elongation by RNA polymerase II IEP HCCA
BP GO:0006575 cellular modified amino acid metabolic process IEP HCCA
BP GO:0006766 vitamin metabolic process IEP HCCA
BP GO:0006767 water-soluble vitamin metabolic process IEP HCCA
CC GO:0008023 transcription elongation factor complex IEP HCCA
MF GO:0008374 O-acyltransferase activity IEP HCCA
BP GO:0009110 vitamin biosynthetic process IEP HCCA
BP GO:0015939 pantothenate metabolic process IEP HCCA
BP GO:0015940 pantothenate biosynthetic process IEP HCCA
BP GO:0016053 organic acid biosynthetic process IEP HCCA
BP GO:0016570 histone modification IEP HCCA
CC GO:0016593 Cdc73/Paf1 complex IEP HCCA
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP HCCA
MF GO:0016746 acyltransferase activity IEP HCCA
MF GO:0016747 acyltransferase activity, transferring groups other than amino-acyl groups IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016879 ligase activity, forming carbon-nitrogen bonds IEP HCCA
MF GO:0016881 acid-amino acid ligase activity IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
BP GO:0032787 monocarboxylic acid metabolic process IEP HCCA
BP GO:0042364 water-soluble vitamin biosynthetic process IEP HCCA
BP GO:0042398 cellular modified amino acid biosynthetic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
BP GO:0044283 small molecule biosynthetic process IEP HCCA
BP GO:0046394 carboxylic acid biosynthetic process IEP HCCA
BP GO:0072330 monocarboxylic acid biosynthetic process IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 150 211
No external refs found!