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  5. Sam_g07841

Sam_g07841


Description : 3-dehydroquinate dehydratase and shikimate dehydrogenase & original description: none


Gene families : OG0001444 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001444_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g07841

Target Alias Description ECC score Gene Family Method Actions
LOC_Os01g27750.1 MEE32, EMB3004,... 3-dehydroquinate dehydratase and shikimate dehydrogenase 0.02 OrthoFinder output from all 47 species
Pir_g01339 MEE32, EMB3004 3-dehydroquinate dehydratase and shikimate dehydrogenase... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0029.g010271 MEE32, EMB3004 3-dehydroquinate dehydratase and shikimate dehydrogenase... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0004764 shikimate 3-dehydrogenase (NADP+) activity IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0006099 tricarboxylic acid cycle IEP HCCA
BP GO:0006605 protein targeting IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0008104 protein localization IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
BP GO:0015031 protein transport IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
CC GO:0035145 exon-exon junction complex IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
MF GO:0046912 acyltransferase activity, acyl groups converted into alkyl on transfer IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
InterPro domains Description Start Stop
IPR001381 DHquinase_I 132 349
IPR006151 Shikm_DH/Glu-tRNA_Rdtase 482 549
IPR013708 Shikimate_DH-bd_N 363 443
No external refs found!