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  5. Sam_g07218

Sam_g07218


Description : transcription factor *(FCA/SSF) & original description: none


Gene families : OG0001208 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001208_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g07218

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00046p00168380 FCA,... Flowering time control protein FCA OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
AT4G16280 FCA RNA binding;abscisic acid binding 0.02 OrthoFinder output from all 47 species
Adi_g021978 FCA transcription factor *(FCA/SSF) & original description: none 0.05 OrthoFinder output from all 47 species
Aob_g24337 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g01730 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g09993 FCA transcription factor *(FCA/SSF) & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g19292 FCA transcription factor *(FCA/SSF) & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01034966001 FCA Flowering time control protein FCA OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Gb_05124 FCA no description available(sp|b8bcz8|fca_orysi : 224.0) 0.03 OrthoFinder output from all 47 species
LOC_Os09g03610.1 FCA, LOC_Os09g03610 no description available(sp|q6k271|fca_orysj : 775.0) 0.02 OrthoFinder output from all 47 species
Lfl_g06188 FCA transcription factor *(FCA/SSF) & original description: none 0.04 OrthoFinder output from all 47 species
Mp7g15600.1 FCA Flowering time control protein FCA OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
Pir_g12927 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g44791 FCA transcription factor *(FCA/SSF) & original description: none 0.02 OrthoFinder output from all 47 species
Solyc01g058450.3.1 FCA, Solyc01g058450 Flowering time control protein FCA OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Spa_g56153 FCA transcription factor *(FCA/SSF) & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g10875 FCA transcription factor *(FCA/SSF) & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e009433_P002 FCA, Zm00001e009433 no description available(sp|b8bcz8|fca_orysi : 625.0) 0.04 OrthoFinder output from all 47 species
Zm00001e026764_P001 RBP-DR1,... RNA-binding protein BRN1 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0002097 tRNA wobble base modification IEP HCCA
BP GO:0002098 tRNA wobble uridine modification IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006400 tRNA modification IEP HCCA
BP GO:0008033 tRNA processing IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
CC GO:0032039 integrator complex IEP HCCA
BP GO:0032446 protein modification by small protein conjugation IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
CC GO:0033588 elongator holoenzyme complex IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
MF GO:0061659 ubiquitin-like protein ligase activity IEP HCCA
MF GO:0061666 UFM1 ligase activity IEP HCCA
MF GO:0070569 uridylyltransferase activity IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
MF GO:0071568 UFM1 transferase activity IEP HCCA
BP GO:0071569 protein ufmylation IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 329 391
IPR001202 WW_dom 716 742
IPR000782 FAS1_domain 50 159
No external refs found!