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  5. Sam_g07166

Sam_g07166


Description : component *(SF3B3) of splicing factor 3B complex & original description: none


Gene families : OG0007395 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007395_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g07166
Cluster HCCA: Cluster_172

Target Alias Description ECC score Gene Family Method Actions
AT3G55200 No alias Cleavage and polyadenylation specificity factor (CPSF) A... 0.02 OrthoFinder output from all 47 species
AT3G55220 No alias Cleavage and polyadenylation specificity factor (CPSF) A... 0.02 OrthoFinder output from all 47 species
Cba_g04093 No alias component *(SF3B3) of splicing factor 3B complex &... 0.03 OrthoFinder output from all 47 species
Ceric.26G015800.1 Ceric.26G015800 component *(SF3B3) of splicing factor 3B complex &... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001024.5 No alias RNA processing.RNA splicing.U2-type-intron-specific... 0.02 OrthoFinder output from all 47 species
Cre08.g372800 No alias RNA processing.RNA splicing.U2-type-intron-specific... 0.02 OrthoFinder output from all 47 species
Gb_38044 No alias component SF3B3 of splicing factor 3B complex 0.04 OrthoFinder output from all 47 species
LOC_Os02g04480.1 LOC_Os02g04480 component SF3B3 of splicing factor 3B complex 0.04 OrthoFinder output from all 47 species
MA_10430596g0010 No alias component SF3B3 of splicing factor 3B complex 0.04 OrthoFinder output from all 47 species
Mp7g13330.1 No alias component SF3B3 of splicing factor 3B complex 0.02 OrthoFinder output from all 47 species
Solyc04g010260.3.1 Solyc04g010260 component SF3B3 of splicing factor 3B complex 0.05 OrthoFinder output from all 47 species
Zm00001e013611_P001 Zm00001e013611 component SF3B3 of splicing factor 3B complex 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
CC GO:0005634 nucleus IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003916 DNA topoisomerase activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
CC GO:0005643 nuclear pore IEP HCCA
CC GO:0005694 chromosome IEP HCCA
BP GO:0006265 DNA topological change IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0006913 nucleocytoplasmic transport IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
MF GO:0008168 methyltransferase activity IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016741 transferase activity, transferring one-carbon groups IEP HCCA
MF GO:0017056 structural constituent of nuclear pore IEP HCCA
MF GO:0019899 enzyme binding IEP HCCA
MF GO:0031267 small GTPase binding IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
MF GO:0051020 GTPase binding IEP HCCA
BP GO:0051169 nuclear transport IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
BP GO:0071103 DNA conformation change IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
InterPro domains Description Start Stop
IPR018846 Cleavage/polyA-sp_fac_asu_N 75 589
IPR004871 Cleavage/polyA-sp_fac_asu_C 853 1172
No external refs found!