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  5. Sam_g06999

Sam_g06999


Description : not classified & original description: none


Gene families : OG0001265 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001265_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g06999

Target Alias Description ECC score Gene Family Method Actions
Adi_g018223 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g025859 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g040822 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g079530 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g083877 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g16104 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0226.g058986 No alias not classified & original description: CDS=214-2052 0.03 OrthoFinder output from all 47 species
Cba_g13480 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.01G051600.1 Ceric.01G051600 not classified & original description: pacid=50592490... 0.02 OrthoFinder output from all 47 species
Ceric.25G014900.1 Ceric.25G014900 not classified & original description: pacid=50594354... 0.01 OrthoFinder output from all 47 species
Ceric.25G071400.1 Ceric.25G071400 not classified & original description: pacid=50593370... 0.02 OrthoFinder output from all 47 species
Ceric.39G011900.1 Ceric.39G011900 not classified & original description: pacid=50583491... 0.03 OrthoFinder output from all 47 species
Dac_g14857 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g15142 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g27115 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g09675 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g12133 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g23949 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g16481 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g09433 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g09665 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g26126 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g40752 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g15398 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e018673_P002 Zm00001e018673 Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Zm00001e028338_P001 Zm00001e028338 Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000272 polysaccharide catabolic process IEP HCCA
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP HCCA
BP GO:0000398 mRNA splicing, via spliceosome IEP HCCA
MF GO:0004601 peroxidase activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
BP GO:0005976 polysaccharide metabolic process IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006979 response to oxidative stress IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
BP GO:0016052 carbohydrate catabolic process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0016160 amylase activity IEP HCCA
MF GO:0016161 beta-amylase activity IEP HCCA
MF GO:0016684 oxidoreductase activity, acting on peroxide as acceptor IEP HCCA
CC GO:0030684 preribosome IEP HCCA
CC GO:0030688 preribosome, small subunit precursor IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
MF GO:0042393 histone binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043169 cation binding IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 292 349
IPR000504 RRM_dom 13 80
IPR000504 RRM_dom 101 161
No external refs found!