Sam_g06614

Description : RNA-cap-binding factor (4EHP) & original description: none

Gene families : OG0007108 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007108_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Sam_g06614

Target	Alias	Description	ECC score	Gene Family Method
Als_g59031	NCBP	RNA-cap-binding factor (4EHP) & original description: none	0.02	OrthoFinder output from all 47 species
Azfi_s0012.g012870	NCBP	RNA-cap-binding factor (4EHP) & original description: CDS=1-612	0.03	OrthoFinder output from all 47 species
Ceric.19G012400.1	NCBP, Ceric.19G012400	RNA-cap-binding factor (4EHP) & original description:...	0.02	OrthoFinder output from all 47 species
GSVIVT01033412001	NCBP	Protein biosynthesis.translation initiation.mRNA...	0.02	OrthoFinder output from all 47 species
Solyc10g080660.3.1	NCBP, Solyc10g080660	RNA-cap-binding factor (4EHP)	0.03	OrthoFinder output from all 47 species
Spa_g10021	NCBP	RNA-cap-binding factor (4EHP) & original description: none	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	IEA	Interproscan
MF	GO:0003743	translation initiation factor activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006413	translational initiation	IEA	Interproscan
MF	GO:0008135	translation factor activity, RNA binding	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
MF	GO:0045182	translation regulator activity	None	Extended
MF	GO:0090079	translation regulator activity, nucleic acid binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0005515	protein binding	IEP	HCCA
CC	GO:0005667	transcription regulator complex	IEP	HCCA
CC	GO:0005669	transcription factor TFIID complex	IEP	HCCA
BP	GO:0006352	DNA-templated transcription initiation	IEP	HCCA
MF	GO:0031072	heat shock protein binding	IEP	HCCA
BP	GO:0032774	RNA biosynthetic process	IEP	HCCA
MF	GO:0043565	sequence-specific DNA binding	IEP	HCCA
MF	GO:0051082	unfolded protein binding	IEP	HCCA
BP	GO:0065003	protein-containing complex assembly	IEP	HCCA
BP	GO:0070070	proton-transporting V-type ATPase complex assembly	IEP	HCCA
BP	GO:0070071	proton-transporting two-sector ATPase complex assembly	IEP	HCCA
BP	GO:0070072	vacuolar proton-transporting V-type ATPase complex assembly	IEP	HCCA
CC	GO:0090575	RNA polymerase II transcription regulator complex	IEP	HCCA
CC	GO:0140513	nuclear protein-containing complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001040	TIF_eIF_4E	119	277

External Links

No external refs found!