Sam_g06587


Description : not classified & original description: none


Gene families : OG0001843 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001843_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g06587

Target Alias Description ECC score Gene Family Method Actions
Adi_g010784 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g015212 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Adi_g015213 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Adi_g015214 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g016106 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g023304 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g046355 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g113087 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g113088 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g02864 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g01540 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g01963 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g05900 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g20928 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s0001.g000991 No alias not classified & original description: CDS=384-923 0.03 OrthoFinder output from all 47 species
Azfi_s0006.g010308 No alias not classified & original description: CDS=1-894 0.05 OrthoFinder output from all 47 species
Azfi_s0049.g030830 No alias not classified & original description: CDS=21-1442 0.03 OrthoFinder output from all 47 species
Azfi_s0116.g046360 No alias not classified & original description: CDS=83-760 0.03 OrthoFinder output from all 47 species
Cba_g05124 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g19818 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.24G060800.1 Ceric.24G060800 not classified & original description: pacid=50629393... 0.03 OrthoFinder output from all 47 species
Dac_g00520 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g10039 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g11619 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g10321 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g01836 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g04245 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g19667 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g38624 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g39754 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g08933 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g00763 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0009.g004360 No alias not classified & original description: CDS=184-687 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0045.g013292 No alias not classified & original description: CDS=107-649 0.07 OrthoFinder output from all 47 species
Sacu_v1.1_s0046.g013395 No alias not classified & original description: CDS=85-822 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0250.g026752 No alias not classified & original description: CDS=152-814 0.05 OrthoFinder output from all 47 species
Sam_g10901 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g06801 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Tin_g01612 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Tin_g10596 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003906 DNA-(apurinic or apyrimidinic site) endonuclease activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006284 base-excision repair IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0016799 hydrolase activity, hydrolyzing N-glycosyl compounds IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0019104 DNA N-glycosylase activity IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
MF GO:0043169 cation binding IEP HCCA
MF GO:0043565 sequence-specific DNA binding IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA

No InterPro domains available for this sequence

No external refs found!