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  5. Sam_g06417

Sam_g06417


Description : GARP subgroup PHL transcription factor & original description: none


Gene families : OG0000036 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g06417

Target Alias Description ECC score Gene Family Method Actions
Aob_g30442 No alias GARP subgroup PHL transcription factor & original... 0.03 OrthoFinder output from all 47 species
Aspi01Gene25096.t1 Aspi01Gene25096 GARP subgroup PHL transcription factor & original... 0.02 OrthoFinder output from all 47 species
Aspi01Gene56415.t1 Aspi01Gene56415 transcription factor *(CLAUSA) & original description: none 0.03 OrthoFinder output from all 47 species
LOC_Os07g48596.1 LOC_Os07g48596 G2-like GARP transcription factor 0.02 OrthoFinder output from all 47 species
Pp3c23_8710V3.1 Pp3c23_8710 myb-like HTH transcriptional regulator family protein 0.02 OrthoFinder output from all 47 species
Spa_g28810 No alias GARP subgroup PHL transcription factor & original... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
BP GO:0006720 isoprenoid metabolic process IEP HCCA
BP GO:0008299 isoprenoid biosynthetic process IEP HCCA
BP GO:0008610 lipid biosynthetic process IEP HCCA
MF GO:0042393 histone binding IEP HCCA
MF GO:0043565 sequence-specific DNA binding IEP HCCA
BP GO:0044255 cellular lipid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR025756 Myb_CC_LHEQLE 137 183
IPR001005 SANT/Myb 54 104
No external refs found!