Sam_g05554

Description : component *(uL6) of large ribosomal-subunit (LSU) proteome & original description: none

Gene families : OG0001493 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001493_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Sam_g05554
Cluster	HCCA: Cluster_28

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00018p00131950	evm_27.TU.AmTr_v1...	Protein biosynthesis.cytosolic ribosome.large subunit...	0.09	OrthoFinder output from all 47 species
AMTR_s00048p00062300	evm_27.TU.AmTr_v1...	Protein biosynthesis.cytosolic ribosome.large subunit...	0.06	OrthoFinder output from all 47 species
AT1G33120	No alias	Ribosomal protein L6 family	0.12	OrthoFinder output from all 47 species
AT1G33140	PGY2	Ribosomal protein L6 family	0.12	OrthoFinder output from all 47 species
AT4G10450	No alias	Ribosomal protein L6 family	0.07	OrthoFinder output from all 47 species
Adi_g042779	No alias	component *(uL6) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Adi_g042780	No alias	component *(uL6) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Adi_g046740	No alias	component *(uL6) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Adi_g082405	No alias	component *(uL6) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Ala_g08837	No alias	component *(uL6) of large ribosomal-subunit (LSU)...	0.08	OrthoFinder output from all 47 species
Als_g62254	No alias	component *(uL6) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Aob_g00632	No alias	component *(uL6) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Aop_g00197	No alias	component *(uL6) of large ribosomal-subunit (LSU)...	0.08	OrthoFinder output from all 47 species
Azfi_s0007.g011131	No alias	component *(uL6) of large ribosomal-subunit (LSU)...	0.11	OrthoFinder output from all 47 species
Cba_g59726	No alias	component *(uL6) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Cba_g71228	No alias	component *(uL6) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Ceric.01G085000.1	Ceric.01G085000	component *(uL6) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Ceric.13G058300.1	Ceric.13G058300	component *(uL6) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Ceric.1Z004300.1	Ceric.1Z004300	component *(uL6) of large ribosomal-subunit (LSU)...	0.1	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00001532.12	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.15	OrthoFinder output from all 47 species
Cre12.g494050	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.14	OrthoFinder output from all 47 species
Dac_g00432	No alias	component *(uL6) of large ribosomal-subunit (LSU)...	0.07	OrthoFinder output from all 47 species
Dcu_g27021	No alias	component *(uL6) of large ribosomal-subunit (LSU)...	0.1	OrthoFinder output from all 47 species
Dde_g08736	No alias	component *(uL6) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Dde_g08737	No alias	component *(uL6) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
GSVIVT01016795001	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.08	OrthoFinder output from all 47 species
GSVIVT01038670001	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.08	OrthoFinder output from all 47 species
LOC_Os02g01332.1	LOC_Os02g01332	component RPL9 of LSU proteome component	0.06	OrthoFinder output from all 47 species
LOC_Os09g31180.1	LOC_Os09g31180	component RPL9 of LSU proteome component	0.13	OrthoFinder output from all 47 species
Len_g14020	No alias	component *(uL6) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Lfl_g20813	No alias	component *(uL6) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
MA_38141g0010	No alias	component RPL9 of LSU proteome component	0.07	OrthoFinder output from all 47 species
Mp4g24070.1	No alias	component RPL9 of LSU proteome component	0.13	OrthoFinder output from all 47 species
Msp_g02241	No alias	component *(uL6) of large ribosomal-subunit (LSU)...	0.1	OrthoFinder output from all 47 species
Nbi_g19909	No alias	component *(uL6) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Ore_g07770	No alias	component *(uL6) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Ore_g07771	No alias	component *(uL6) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Pir_g01800	No alias	component *(uL6) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Pir_g29031	No alias	component *(uL6) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Pp3c10_8500V3.1	Pp3c10_8500	Ribosomal protein L6 family	0.07	OrthoFinder output from all 47 species
Pp3c14_8600V3.1	Pp3c14_8600	Ribosomal protein L6 family	0.06	OrthoFinder output from all 47 species
Pp3c16_20070V3.1	Pp3c16_20070	Ribosomal protein L6 family	0.05	OrthoFinder output from all 47 species
Ppi_g20158	No alias	component *(uL6) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Ppi_g20199	No alias	component *(uL6) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Ppi_g28530	No alias	component *(uL6) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Ppi_g34050	No alias	component *(uL6) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0008.g004263	No alias	component *(uL6) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Sam_g11980	No alias	component *(uL6) of large ribosomal-subunit (LSU)...	0.08	OrthoFinder output from all 47 species
Sam_g12947	No alias	component *(uL6) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Sam_g12948	No alias	component *(uL6) of large ribosomal-subunit (LSU)...	0.07	OrthoFinder output from all 47 species
Sam_g32375	No alias	component *(uL6) of large ribosomal-subunit (LSU)...	0.07	OrthoFinder output from all 47 species
Sam_g42265	No alias	component *(uL6) of large ribosomal-subunit (LSU)...	0.08	OrthoFinder output from all 47 species
Smo269009	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.1	OrthoFinder output from all 47 species
Solyc06g073310.3.1	Solyc06g073310	component RPL9 of LSU proteome component	0.19	OrthoFinder output from all 47 species
Solyc08g014550.3.1	Solyc08g014550	component RPL9 of LSU proteome component	0.14	OrthoFinder output from all 47 species
Solyc12g096700.2.1	Solyc12g096700	component RPL9 of LSU proteome component	0.15	OrthoFinder output from all 47 species
Spa_g22811	No alias	component *(uL6) of large ribosomal-subunit (LSU)...	0.08	OrthoFinder output from all 47 species
Spa_g24089	No alias	component *(uL6) of large ribosomal-subunit (LSU)...	0.13	OrthoFinder output from all 47 species
Spa_g28673	No alias	component *(uL6) of large ribosomal-subunit (LSU)...	0.06	OrthoFinder output from all 47 species
Spa_g43562	No alias	component *(uL6) of large ribosomal-subunit (LSU)...	0.09	OrthoFinder output from all 47 species
Tin_g00341	No alias	component *(uL6) of large ribosomal-subunit (LSU)...	0.07	OrthoFinder output from all 47 species
Zm00001e025404_P001	Zm00001e025404	component RPL9 of LSU proteome component	0.02	OrthoFinder output from all 47 species
Zm00001e029810_P003	Zm00001e029810	component RPL9 of LSU proteome component	0.12	OrthoFinder output from all 47 species
Zm00001e036699_P002	Zm00001e036699	component RPL9 of LSU proteome component	0.08	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0019843	rRNA binding	IEA	Interproscan
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000413	protein peptidyl-prolyl isomerization	IEP	HCCA
MF	GO:0003746	translation elongation factor activity	IEP	HCCA
MF	GO:0005216	monoatomic ion channel activity	IEP	HCCA
MF	GO:0005261	monoatomic cation channel activity	IEP	HCCA
BP	GO:0006164	purine nucleotide biosynthetic process	IEP	HCCA
BP	GO:0006414	translational elongation	IEP	HCCA
BP	GO:0006754	ATP biosynthetic process	IEP	HCCA
MF	GO:0008097	5S rRNA binding	IEP	HCCA
MF	GO:0008135	translation factor activity, RNA binding	IEP	HCCA
BP	GO:0009142	nucleoside triphosphate biosynthetic process	IEP	HCCA
BP	GO:0009145	purine nucleoside triphosphate biosynthetic process	IEP	HCCA
BP	GO:0009152	purine ribonucleotide biosynthetic process	IEP	HCCA
BP	GO:0009201	ribonucleoside triphosphate biosynthetic process	IEP	HCCA
BP	GO:0009206	purine ribonucleoside triphosphate biosynthetic process	IEP	HCCA
BP	GO:0009260	ribonucleotide biosynthetic process	IEP	HCCA
MF	GO:0015252	proton channel activity	IEP	HCCA
BP	GO:0015986	proton motive force-driven ATP synthesis	IEP	HCCA
BP	GO:0018193	peptidyl-amino acid modification	IEP	HCCA
BP	GO:0018208	peptidyl-proline modification	IEP	HCCA
MF	GO:0045182	translation regulator activity	IEP	HCCA
BP	GO:0046390	ribose phosphate biosynthetic process	IEP	HCCA
MF	GO:0046933	proton-transporting ATP synthase activity, rotational mechanism	IEP	HCCA
BP	GO:0072522	purine-containing compound biosynthetic process	IEP	HCCA
MF	GO:0090079	translation regulator activity, nucleic acid binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR020040	Ribosomal_L6_a/b-dom	12	84
IPR020040	Ribosomal_L6_a/b-dom	96	174

External Links

No external refs found!

Sam_g05554

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation