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  5. Lfl_g25839

Lfl_g25839 (AtLa1, La1)


Aliases : AtLa1, La1

Description : nascent RNA chaperone *(LA) & original description: none


Gene families : OG0003172 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003172_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Lfl_g25839

Target Alias Description ECC score Gene Family Method Actions
AT4G32720 AtLa1, La1 La protein 1 0.04 OrthoFinder output from all 47 species
Aev_g11405 AtLa1, La1 nascent RNA chaperone *(LA) & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g08492 AtLa1, La1 nascent RNA chaperone *(LA) & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g09267 AtLa1, La1 nascent RNA chaperone *(LA) & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01035666001 AtLa1, La1 La protein 1 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Len_g05279 AtLa1, La1 nascent RNA chaperone *(LA) & original description: none 0.02 OrthoFinder output from all 47 species
MA_697179g0010 AtLa1, La1 RNA chaperone (LA). rRNA chaperone (IRP2) 0.05 OrthoFinder output from all 47 species
MA_78251g0010 AtLa1, La1 La protein 1 OS=Arabidopsis thaliana... 0.05 OrthoFinder output from all 47 species
Mp1g04820.1 AtLa1, La1 RNA chaperone (LA). rRNA chaperone (IRP2) 0.03 OrthoFinder output from all 47 species
Sam_g10340 No alias nascent RNA chaperone *(LA) & original description: none 0.02 OrthoFinder output from all 47 species
Solyc08g068310.3.1 AtLa1, La1,... RNA chaperone (LA). rRNA chaperone (IRP2) 0.05 OrthoFinder output from all 47 species
Tin_g31164 AtLa1, La1 nascent RNA chaperone *(LA) & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e015074_P001 AtLa1, La1,... RNA chaperone (LA). rRNA chaperone (IRP2) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0016020 membrane IEP HCCA
MF GO:0016887 ATP hydrolysis activity IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0032977 membrane insertase activity IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
MF GO:0044183 protein folding chaperone IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140104 molecular carrier activity IEP HCCA
MF GO:0140597 protein carrier chaperone IEP HCCA
MF GO:0140662 ATP-dependent protein folding chaperone IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
InterPro domains Description Start Stop
IPR006630 La_HTH 112 181
IPR006630 La_HTH 13 82
IPR014886 La_xRRM 438 531
IPR000504 RRM_dom 221 272
No external refs found!