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  5. Sam_g04734

Sam_g04734


Description : not classified & original description: none


Gene families : OG0000088 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000088_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g04734

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00016p00168950 HSS, ARF1-BP,... RNA biosynthesis.transcriptional activation.B3... 0.02 OrthoFinder output from all 47 species
Cba_g17172 ARF6 ARF-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g72993 ARF16 ARF-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g41121 ARF16 ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g28203 ARF19, IAA22, ARF11 ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g12046 No alias ARF-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Solyc07g043610.3.1 ARF6, Solyc07g043610 transcription factor (ARF) 0.02 OrthoFinder output from all 47 species
Solyc07g043620.3.1 ARF6, Solyc07g043620 transcription factor (ARF) 0.03 OrthoFinder output from all 47 species
Zm00001e013061_P001 ARF16, Zm00001e013061 transcription factor (ARF) 0.02 OrthoFinder output from all 47 species
Zm00001e036249_P003 ARF19, IAA22,... transcription factor (ARF) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006099 tricarboxylic acid cycle IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
MF GO:0015035 protein-disulfide reductase activity IEP HCCA
MF GO:0015036 disulfide oxidoreductase activity IEP HCCA
MF GO:0016667 oxidoreductase activity, acting on a sulfur group of donors IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0016829 lyase activity IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA

No InterPro domains available for this sequence

No external refs found!