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  5. Sam_g04263

Sam_g04263


Description : not classified & original description: none


Gene families : OG0000121 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000121_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g04263

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00197p00030350 SPL7, ATSPL7,... Nutrient uptake.copper uptake.regulation.SPL7 copper... 0.02 OrthoFinder output from all 47 species
Adi_g077071 SPL8 SBP-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g085801 SPL7, ATSPL7 SBP-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g12454 SPL7, ATSPL7 SBP-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g31126 SPL7, ATSPL7 SBP-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Len_g40710 SPL8 SBP-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g30412 No alias SBP-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g10032 SPL3 SBP-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e041822_P001 SPL8, Zm00001e041822 transcription factor (SBP) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000491 small nucleolar ribonucleoprotein complex assembly IEP HCCA
BP GO:0000492 box C/D snoRNP assembly IEP HCCA
MF GO:0003712 transcription coregulator activity IEP HCCA
MF GO:0004843 cysteine-type deubiquitinase activity IEP HCCA
BP GO:0006357 regulation of transcription by RNA polymerase II IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
CC GO:0016592 mediator complex IEP HCCA
MF GO:0019783 ubiquitin-like protein peptidase activity IEP HCCA
MF GO:0019843 rRNA binding IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
BP GO:0022613 ribonucleoprotein complex biogenesis IEP HCCA
BP GO:0022618 ribonucleoprotein complex assembly IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
BP GO:0042274 ribosomal small subunit biogenesis IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
BP GO:0071826 ribonucleoprotein complex subunit organization IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
MF GO:0101005 deubiquitinase activity IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA

No InterPro domains available for this sequence

No external refs found!