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  5. Sam_g02910

Sam_g02910


Description : apocytochrome b component *(PetB) of cytochrome b6/f complex & original description: none


Gene families : OG0002807 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002807_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g02910

Target Alias Description ECC score Gene Family Method Actions
AT2G07727 No alias Di-haem cytochrome, transmembrane;Cytochrome b/b6, C-terminal 0.02 OrthoFinder output from all 47 species
ATCG00720 PETB photosynthetic electron transfer B 0.09 OrthoFinder output from all 47 species
Aev_g24354 No alias apocytochrome b component of cytochrome c reductase... 0.08 OrthoFinder output from all 47 species
Aev_g27762 PETB apocytochrome b component *(PetB) of cytochrome b6/f... 0.08 OrthoFinder output from all 47 species
Azfi_s0264.g060907 No alias not classified & original description: CDS=1-306 0.02 OrthoFinder output from all 47 species
Ceric.05G041700.1 PETB, Ceric.05G041700 not classified & original description: pacid=50577646... 0.1 OrthoFinder output from all 47 species
Ceric.05G044900.1 PETB, Ceric.05G044900 not classified & original description: pacid=50577209... 0.04 OrthoFinder output from all 47 species
Ceric.05G051500.1 PETB, Ceric.05G051500 not classified & original description: pacid=50578079... 0.06 OrthoFinder output from all 47 species
Ceric.1Z019500.1 PETB, Ceric.1Z019500 apocytochrome b component *(PetB) of cytochrome b6/f... 0.07 OrthoFinder output from all 47 species
Ceric.1Z020900.1 PETB, Ceric.1Z020900 not classified & original description: pacid=50586386... 0.03 OrthoFinder output from all 47 species
Ceric.1Z163200.1 PETB, Ceric.1Z163200 not classified & original description: pacid=50596955... 0.06 OrthoFinder output from all 47 species
Ceric.1Z190500.1 Ceric.1Z190500 not classified & original description: pacid=50582113... 0.04 OrthoFinder output from all 47 species
Ceric.1Z200500.1 Ceric.1Z200500 not classified & original description: pacid=50618881... 0.1 OrthoFinder output from all 47 species
Ceric.1Z276900.1 Ceric.1Z276900 not classified & original description: pacid=50569323... 0.1 OrthoFinder output from all 47 species
Ceric.1Z297500.1 Ceric.1Z297500 not classified & original description: pacid=50597032... 0.1 OrthoFinder output from all 47 species
Ceric.1Z311700.1 Ceric.1Z311700 not classified & original description: pacid=50567778... 0.1 OrthoFinder output from all 47 species
Ceric.29G003700.1 PETB, Ceric.29G003700 not classified & original description: pacid=50624590... 0.05 OrthoFinder output from all 47 species
Ceric.36G044700.1 PETB, Ceric.36G044700 not classified & original description: pacid=50568540... 0.05 OrthoFinder output from all 47 species
Ceric.38G008400.1 PETB, Ceric.38G008400 not classified & original description: pacid=50579337... 0.1 OrthoFinder output from all 47 species
Gb_16762 No alias cytochrome b component of cytochrome c reductase complex 0.05 OrthoFinder output from all 47 species
Gb_17283 No alias Cytochrome b6 OS=Welwitschia mirabilis... 0.06 OrthoFinder output from all 47 species
LOC_Os01g57942.1 PETB, LOC_Os01g57942 apocytochrome b component PetB of cytochrome b6/f complex 0.12 OrthoFinder output from all 47 species
LOC_Os04g16846.1 PETB, LOC_Os04g16846 apocytochrome b component PetB of cytochrome b6/f complex 0.12 OrthoFinder output from all 47 species
LOC_Os10g21324.1 PETB, LOC_Os10g21324 apocytochrome b component PetB of cytochrome b6/f complex 0.12 OrthoFinder output from all 47 species
MA_10392603g0010 No alias Cytochrome b OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Mp1g00740.1 PETB Cytochrome b6 OS=Marchantia polymorpha... 0.08 OrthoFinder output from all 47 species
Ore_g00397 PETB apocytochrome b component *(PetB) of cytochrome b6/f... 0.12 OrthoFinder output from all 47 species
Pp3c21_5670V3.1 PETD, Pp3c21_5670 photosynthetic electron transfer D 0.03 OrthoFinder output from all 47 species
Ppi_g00989 PETB apocytochrome b component *(PetB) of cytochrome b6/f... 0.1 OrthoFinder output from all 47 species
Smo137714 PETB Cytochrome b6 OS=Pinus thunbergii 0.08 OrthoFinder output from all 47 species
Smo139134 No alias Cytochrome b OS=Marchantia polymorpha 0.03 OrthoFinder output from all 47 species
Solyc07g032450.1.1 PETB, Solyc07g032450 Cytochrome b6 OS=Panax ginseng (sp|q68rx7|cyb6_pangi : 96.7) 0.02 OrthoFinder output from all 47 species
Spa_g23500 No alias apocytochrome b component of cytochrome c reductase... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0009055 electron transfer activity IEA Interproscan
CC GO:0016020 membrane IEA Interproscan
MF GO:0016491 oxidoreductase activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000287 magnesium ion binding IEP HCCA
BP GO:0006091 generation of precursor metabolites and energy IEP HCCA
CC GO:0009521 photosystem IEP HCCA
CC GO:0009579 thylakoid IEP HCCA
BP GO:0009767 photosynthetic electron transport chain IEP HCCA
BP GO:0015979 photosynthesis IEP HCCA
MF GO:0016168 chlorophyll binding IEP HCCA
MF GO:0016829 lyase activity IEP HCCA
MF GO:0016830 carbon-carbon lyase activity IEP HCCA
MF GO:0016831 carboxy-lyase activity IEP HCCA
MF GO:0016984 ribulose-bisphosphate carboxylase activity IEP HCCA
BP GO:0019684 photosynthesis, light reaction IEP HCCA
BP GO:0022900 electron transport chain IEP HCCA
MF GO:0046906 tetrapyrrole binding IEP HCCA
InterPro domains Description Start Stop
IPR005797 Cyt_b/b6_N 22 210
No external refs found!