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  5. Sam_g00809

Sam_g00809


Description : RNA polymerase-IV-positioning factor *(SHH) & original description: none


Gene families : OG0001794 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001794_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g00809

Target Alias Description ECC score Gene Family Method Actions
Als_g00757 No alias RNA polymerase-IV-positioning factor *(SHH) & original... 0.05 OrthoFinder output from all 47 species
Aop_g00386 No alias RNA polymerase-IV-positioning factor *(SHH) & original... 0.03 OrthoFinder output from all 47 species
Aop_g35425 No alias RNA polymerase-IV-positioning factor *(SHH) & original... 0.02 OrthoFinder output from all 47 species
Azfi_s0001.g000126 No alias RNA polymerase-IV-positioning factor *(SHH) & original... 0.03 OrthoFinder output from all 47 species
Azfi_s0001.g000230 No alias RNA polymerase-IV-positioning factor *(SHH) & original... 0.04 OrthoFinder output from all 47 species
Ceric.18G005800.1 Ceric.18G005800 RNA polymerase-IV-positioning factor *(SHH) & original... 0.03 OrthoFinder output from all 47 species
Dde_g49432 No alias RNA polymerase-IV-positioning factor *(SHH) & original... 0.03 OrthoFinder output from all 47 species
LOC_Os06g29020.1 LOC_Os06g29020 RNA polymerase-IV-positioning factor (SHH).... 0.04 OrthoFinder output from all 47 species
Lfl_g07737 No alias RNA polymerase-IV-positioning factor *(SHH) & original... 0.02 OrthoFinder output from all 47 species
Pir_g03010 No alias RNA polymerase-IV-positioning factor *(SHH) & original... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0039.g012111 No alias RNA polymerase-IV-positioning factor *(SHH) & original... 0.02 OrthoFinder output from all 47 species
Smo405582 No alias RNA biosynthesis.transcriptional activation.HB... 0.02 OrthoFinder output from all 47 species
Solyc10g007130.4.1 Solyc10g007130 RNA polymerase-IV-positioning factor (SHH).... 0.03 OrthoFinder output from all 47 species
Spa_g15008 No alias RNA polymerase-IV-positioning factor *(SHH) & original... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003682 chromatin binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003729 mRNA binding IEP HCCA
CC GO:0005685 U1 snRNP IEP HCCA
CC GO:0005839 proteasome core complex IEP HCCA
BP GO:0006376 mRNA splice site selection IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
BP GO:0022618 ribonucleoprotein complex assembly IEP HCCA
CC GO:0030532 small nuclear ribonucleoprotein complex IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0071826 ribonucleoprotein complex subunit organization IEP HCCA
CC GO:0097525 spliceosomal snRNP complex IEP HCCA
CC GO:0120114 Sm-like protein family complex IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
CC GO:1902494 catalytic complex IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR032001 SAWADEE_dom 71 198
No external refs found!