Sam_g00549

Description : E3 ubiquitin ligase component *(GID2) of GID ubiquitination complex & original description: none

Gene families : OG0002380 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002380_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Sam_g00549

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00033p00020260	evm_27.TU.AmTr_v1...	Protein RMD5 homolog OS=Arabidopsis thaliana	0.02	OrthoFinder output from all 47 species
Als_g00897	No alias	E3 ubiquitin ligase component *(GID2) of GID...	0.03	OrthoFinder output from all 47 species
Aspi01Gene22672.t1	Aspi01Gene22672	E3 ubiquitin ligase component *(GID2) of GID...	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0020.g008078	No alias	E3 ubiquitin ligase component *(GID2) of GID...	0.03	OrthoFinder output from all 47 species
Smo79692	No alias	Protein RMD5 homolog OS=Arabidopsis thaliana	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
No GO annotation available for this sequence

Type	GO Term	Name	Evidence	Source
MF	GO:0003712	transcription coregulator activity	IEP	HCCA
MF	GO:0004843	cysteine-type deubiquitinase activity	IEP	HCCA
BP	GO:0006357	regulation of transcription by RNA polymerase II	IEP	HCCA
BP	GO:0016579	protein deubiquitination	IEP	HCCA
CC	GO:0016592	mediator complex	IEP	HCCA
MF	GO:0019783	ubiquitin-like protein peptidase activity	IEP	HCCA
BP	GO:0070646	protein modification by small protein removal	IEP	HCCA
BP	GO:0070647	protein modification by small protein conjugation or removal	IEP	HCCA
MF	GO:0101005	deubiquitinase activity	IEP	HCCA
CC	GO:0140513	nuclear protein-containing complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR027370	Znf-RING_euk	335	374
IPR024964	CTLH/CRA	157	297

External Links

No external refs found!