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  5. Aob_g39486

Aob_g39486 (CBF5, AtCBF5, NAP57, AtNAP57)


Aliases : CBF5, AtCBF5, NAP57, AtNAP57

Description : pseudouridine synthase component *(Nap57/CBF5) of H/ACA snoRNP RNA pseudouridylation complex & original description: none


Gene families : OG0004128 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004128_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aob_g39486

Target Alias Description ECC score Gene Family Method Actions
Cba_g09620 CBF5, AtCBF5,... pseudouridine synthase component *(Nap57/CBF5) of H/ACA... 0.03 OrthoFinder output from all 47 species
Ceric.36G038600.1 CBF5, AtCBF5,... pseudouridine synthase component *(Nap57/CBF5) of H/ACA... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000553.10 CBF5, AtCBF5,... RNA processing.RNA modification.pseudouridylation.H/ACA... 0.03 OrthoFinder output from all 47 species
Dcu_g11724 CBF5, AtCBF5,... pseudouridine synthase component *(Nap57/CBF5) of H/ACA... 0.06 OrthoFinder output from all 47 species
Dde_g48852 CBF5, AtCBF5,... pseudouridine synthase component *(Nap57/CBF5) of H/ACA... 0.03 OrthoFinder output from all 47 species
Dde_g50563 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
LOC_Os03g25450.1 CBF5, AtCBF5,... pseudouridine synthase component Nap57/CBF5 of H/ACA... 0.02 OrthoFinder output from all 47 species
LOC_Os07g44190.1 CBF5, AtCBF5,... pseudouridine synthase component Nap57/CBF5 of H/ACA... 0.02 OrthoFinder output from all 47 species
Lfl_g10584 CBF5, AtCBF5,... pseudouridine synthase component *(Nap57/CBF5) of H/ACA... 0.03 OrthoFinder output from all 47 species
Pir_g14531 CBF5, AtCBF5,... pseudouridine synthase component *(Nap57/CBF5) of H/ACA... 0.02 OrthoFinder output from all 47 species
Spa_g05917 CBF5, AtCBF5,... pseudouridine synthase component *(Nap57/CBF5) of H/ACA... 0.03 OrthoFinder output from all 47 species
Zm00001e017259_P001 CBF5, AtCBF5,... pseudouridine synthase component Nap57/CBF5 of H/ACA... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP HCCA
BP GO:0000398 mRNA splicing, via spliceosome IEP HCCA
BP GO:0000469 cleavage involved in rRNA processing IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003743 translation initiation factor activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005681 spliceosomal complex IEP HCCA
CC GO:0005694 chromosome IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006413 translational initiation IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
BP GO:0022613 ribonucleoprotein complex biogenesis IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0042274 ribosomal small subunit biogenesis IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:0090305 nucleic acid phosphodiester bond hydrolysis IEP HCCA
BP GO:0090501 RNA phosphodiester bond hydrolysis IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR002501 PsdUridine_synth_N 117 233
IPR032819 TruB_C 234 300
IPR002478 PUA 304 376
IPR012960 Dyskerin-like 56 113
No external refs found!