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  5. Lfl_g24495

Lfl_g24495


Description : component *(uL2) of large ribosomal-subunit (LSU) proteome & original description: none


Gene families : OG0001846 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001846_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Lfl_g24495

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00029p00109050 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.large subunit... 0.03 OrthoFinder output from all 47 species
Adi_g047038 No alias component *(uL2) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Adi_g113531 No alias component *(uL2) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Aop_g12168 No alias component *(uL2) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Aspi01Gene11647.t1 Aspi01Gene11647 component *(uL2) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Ceric.30G024600.1 Ceric.30G024600 component *(uL2) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020965.22 EMB2296 Protein biosynthesis.cytosolic ribosome.large subunit... 0.04 OrthoFinder output from all 47 species
Cre12.g535851 EMB2296 Protein biosynthesis.cytosolic ribosome.large subunit... 0.05 OrthoFinder output from all 47 species
Dac_g02131 No alias component *(uL2) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
LOC_Os12g38000.1 LOC_Os12g38000 component RPL8 of LSU proteome component 0.02 OrthoFinder output from all 47 species
Lfl_g08739 No alias component *(uL2) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
MA_219740g0010 No alias component RPL8 of LSU proteome component 0.02 OrthoFinder output from all 47 species
Mp7g01860.1 EMB2296 component RPL8 of LSU proteome component 0.04 OrthoFinder output from all 47 species
Mp7g08730.1 EMB2296 component RPL8 of LSU proteome component 0.03 OrthoFinder output from all 47 species
Ore_g18847 No alias component *(uL2) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Pp3c12_10200V3.1 EMB2296, Pp3c12_10200 Ribosomal protein L2 family 0.02 OrthoFinder output from all 47 species
Pp3c13_23630V3.1 EMB2296, Pp3c13_23630 Ribosomal protein L2 family 0.03 OrthoFinder output from all 47 species
Pp3c4_12690V3.1 EMB2296, Pp3c4_12690 Ribosomal protein L2 family 0.03 OrthoFinder output from all 47 species
Pp3c4_12720V3.1 EMB2296, Pp3c4_12720 Ribosomal protein L2 family 0.03 OrthoFinder output from all 47 species
Ppi_g33659 EMB2296 component *(uL2) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Sam_g13695 No alias component *(uL2) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Sam_g13696 No alias component *(uL2) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Smo170971 EMB2296 Protein biosynthesis.cytosolic ribosome.large subunit... 0.03 OrthoFinder output from all 47 species
Solyc07g063890.2.1 Solyc07g063890 component RPL8 of LSU proteome component 0.03 OrthoFinder output from all 47 species
Solyc12g005330.2.1 Solyc12g005330 component RPL8 of LSU proteome component 0.03 OrthoFinder output from all 47 species
Spa_g30832 No alias component *(uL2) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Spa_g39107 No alias component *(uL2) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Spa_g52209 No alias component *(uL2) of large ribosomal-subunit (LSU)... 0.06 OrthoFinder output from all 47 species
Zm00001e002931_P001 EMB2296, Zm00001e002931 component RPL8 of LSU proteome component 0.04 OrthoFinder output from all 47 species
Zm00001e018178_P001 EMB2296, Zm00001e018178 component RPL8 of LSU proteome component 0.03 OrthoFinder output from all 47 species
Zm00001e033350_P001 EMB2296, Zm00001e033350 component RPL8 of LSU proteome component 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006457 protein folding IEP HCCA
MF GO:0016462 pyrophosphatase activity IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP HCCA
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP HCCA
MF GO:0016887 ATP hydrolysis activity IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0017111 ribonucleoside triphosphate phosphatase activity IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
MF GO:0044183 protein folding chaperone IEP HCCA
MF GO:0051082 unfolded protein binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
MF GO:0140662 ATP-dependent protein folding chaperone IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
InterPro domains Description Start Stop
IPR022666 Rbsml_prot_L2_RNA-bd_dom 14 90
IPR022669 Ribosomal_L2_C 98 225
No external refs found!