Lfl_g24462 (GATA12)

Aliases : GATA12

Description : transcription factor *(A/B-GATA) & original description: none

Gene families : OG0000100 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000100_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Lfl_g24462
Cluster	HCCA: Cluster_120

Target	Alias	Description	ECC score	Gene Family Method
AT2G45050	GATA2	GATA transcription factor 2	0.02	OrthoFinder output from all 47 species
Adi_g022369	GATA4	transcription factor *(A/B-GATA) & original description: none	0.02	OrthoFinder output from all 47 species
Adi_g082687	GATA5	transcription factor *(A/B-GATA) & original description: none	0.03	OrthoFinder output from all 47 species
Adi_g086607	GATA12	transcription factor *(A/B-GATA) & original description: none	0.02	OrthoFinder output from all 47 species
Adi_g116352	GATA12	transcription factor *(A/B-GATA) & original description: none	0.04	OrthoFinder output from all 47 species
Ala_g37802	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Als_g43029	GATA9	transcription factor *(A/B-GATA) & original description: none	0.06	OrthoFinder output from all 47 species
Aob_g14771	GATA9	transcription factor *(A/B-GATA) & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene69371.t1	GATA12, Aspi01Gene69371	transcription factor *(A/B-GATA) & original description: none	0.03	OrthoFinder output from all 47 species
Dac_g11064	GATA5	transcription factor *(A/B-GATA) & original description: none	0.03	OrthoFinder output from all 47 species
Dcu_g11115	GATA9	transcription factor *(A/B-GATA) & original description: none	0.05	OrthoFinder output from all 47 species
Gb_32966	GATA22, CGA1, GNL	transcription factor (GATA)	0.01	OrthoFinder output from all 47 species
LOC_Os09g08150.1	LOC_Os09g08150	no hits & (original description: none)	0.02	OrthoFinder output from all 47 species
MA_10434815g0010	GATA4	transcription factor (GATA)	0.02	OrthoFinder output from all 47 species
MA_92522g0010	GATA20	transcription factor (GATA)	0.02	OrthoFinder output from all 47 species
Msp_g48249	GATA9	transcription factor *(A/B-GATA) & original description: none	0.03	OrthoFinder output from all 47 species
Nbi_g34157	GATA5	transcription factor *(A/B-GATA) & original description: none	0.02	OrthoFinder output from all 47 species
Sam_g13371	No alias	transcription factor *(A/B-GATA) & original description: none	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	None	Extended
MF	GO:0005488	binding	None	Extended
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
MF	GO:0043565	sequence-specific DNA binding	IEA	Interproscan
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000271	polysaccharide biosynthetic process	IEP	HCCA
BP	GO:0000413	protein peptidyl-prolyl isomerization	IEP	HCCA
MF	GO:0005506	iron ion binding	IEP	HCCA
CC	GO:0005783	endoplasmic reticulum	IEP	HCCA
BP	GO:0005976	polysaccharide metabolic process	IEP	HCCA
BP	GO:0006073	cellular glucan metabolic process	IEP	HCCA
BP	GO:0006790	sulfur compound metabolic process	IEP	HCCA
BP	GO:0008152	metabolic process	IEP	HCCA
BP	GO:0009250	glucan biosynthetic process	IEP	HCCA
BP	GO:0016043	cellular component organization	IEP	HCCA
BP	GO:0016051	carbohydrate biosynthetic process	IEP	HCCA
BP	GO:0016226	iron-sulfur cluster assembly	IEP	HCCA
MF	GO:0016759	cellulose synthase activity	IEP	HCCA
MF	GO:0016760	cellulose synthase (UDP-forming) activity	IEP	HCCA
BP	GO:0018193	peptidyl-amino acid modification	IEP	HCCA
BP	GO:0018208	peptidyl-proline modification	IEP	HCCA
BP	GO:0022607	cellular component assembly	IEP	HCCA
BP	GO:0030243	cellulose metabolic process	IEP	HCCA
BP	GO:0030244	cellulose biosynthetic process	IEP	HCCA
BP	GO:0031163	metallo-sulfur cluster assembly	IEP	HCCA
BP	GO:0033692	cellular polysaccharide biosynthetic process	IEP	HCCA
BP	GO:0034637	cellular carbohydrate biosynthetic process	IEP	HCCA
MF	GO:0035251	UDP-glucosyltransferase activity	IEP	HCCA
MF	GO:0043167	ion binding	IEP	HCCA
MF	GO:0043169	cation binding	IEP	HCCA
BP	GO:0044042	glucan metabolic process	IEP	HCCA
BP	GO:0044264	cellular polysaccharide metabolic process	IEP	HCCA
MF	GO:0046527	glucosyltransferase activity	IEP	HCCA
MF	GO:0046872	metal ion binding	IEP	HCCA
MF	GO:0046914	transition metal ion binding	IEP	HCCA
MF	GO:0051082	unfolded protein binding	IEP	HCCA
BP	GO:0051273	beta-glucan metabolic process	IEP	HCCA
BP	GO:0051274	beta-glucan biosynthetic process	IEP	HCCA
MF	GO:0051536	iron-sulfur cluster binding	IEP	HCCA
MF	GO:0051540	metal cluster binding	IEP	HCCA
BP	GO:0071840	cellular component organization or biogenesis	IEP	HCCA
CC	GO:0110165	cellular anatomical entity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000679	Znf_GATA	54	88

External Links

No external refs found!

Lfl_g24462 (GATA12)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation