1. Home
  2. Species
  3. Abrodictyum obscurum
  4. Sequence
  5. Aob_g33291

Aob_g33291 (SPT16)


Aliases : SPT16

Description : component *(SPT16) of FACT histone chaperone complex & original description: none


Gene families : OG0002057 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002057_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aob_g33291
Cluster HCCA: Cluster_153

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00682p00010920 SPT16,... Chromatin organisation.histone chaperone activities.FACT... 0.07 OrthoFinder output from all 47 species
AT4G10710 SPT16 global transcription factor C 0.03 OrthoFinder output from all 47 species
Adi_g060542 SPT16 component *(SPT16) of FACT histone chaperone complex &... 0.04 OrthoFinder output from all 47 species
Ala_g02640 SPT16 component *(SPT16) of FACT histone chaperone complex &... 0.02 OrthoFinder output from all 47 species
Als_g04476 SPT16 component *(SPT16) of FACT histone chaperone complex &... 0.02 OrthoFinder output from all 47 species
Cba_g25380 SPT16 component *(SPT16) of FACT histone chaperone complex &... 0.02 OrthoFinder output from all 47 species
Ceric.13G070600.1 SPT16, Ceric.13G070600 component *(SPT16) of FACT histone chaperone complex &... 0.02 OrthoFinder output from all 47 species
Dcu_g03153 SPT16 component *(SPT16) of FACT histone chaperone complex &... 0.05 OrthoFinder output from all 47 species
Ehy_g13439 SPT16 component *(SPT16) of FACT histone chaperone complex &... 0.03 OrthoFinder output from all 47 species
GSVIVT01031306001 SPT16 Chromatin organisation.histone chaperone activities.FACT... 0.07 OrthoFinder output from all 47 species
LOC_Os04g25550.1 SPT16, LOC_Os04g25550 component SPT16 of FACT histone chaperone complex 0.03 OrthoFinder output from all 47 species
Len_g04839 SPT16 component *(SPT16) of FACT histone chaperone complex &... 0.02 OrthoFinder output from all 47 species
Lfl_g12952 SPT16 component *(SPT16) of FACT histone chaperone complex &... 0.04 OrthoFinder output from all 47 species
MA_10430230g0030 SPT16 component SPT16 of FACT histone chaperone complex 0.03 OrthoFinder output from all 47 species
Mp1g28760.1 SPT16 component SPT16 of FACT histone chaperone complex 0.05 OrthoFinder output from all 47 species
Ore_g30315 SPT16 component *(SPT16) of FACT histone chaperone complex &... 0.06 OrthoFinder output from all 47 species
Pir_g32598 SPT16 component *(SPT16) of FACT histone chaperone complex &... 0.03 OrthoFinder output from all 47 species
Ppi_g03995 SPT16 component *(SPT16) of FACT histone chaperone complex &... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0124.g021592 SPT16 component *(SPT16) of FACT histone chaperone complex &... 0.03 OrthoFinder output from all 47 species
Spa_g12849 SPT16 component *(SPT16) of FACT histone chaperone complex &... 0.05 OrthoFinder output from all 47 species
Spa_g25832 SPT16 component *(SPT16) of FACT histone chaperone complex &... 0.06 OrthoFinder output from all 47 species
Spa_g29456 SPT16 component *(SPT16) of FACT histone chaperone complex &... 0.02 OrthoFinder output from all 47 species
Tin_g09326 SPT16 component *(SPT16) of FACT histone chaperone complex &... 0.05 OrthoFinder output from all 47 species
Zm00001e013464_P001 SPT16, Zm00001e013464 component SPT16 of FACT histone chaperone complex 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP HCCA
BP GO:0000398 mRNA splicing, via spliceosome IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005681 spliceosomal complex IEP HCCA
CC GO:0005694 chromosome IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
BP GO:0022613 ribonucleoprotein complex biogenesis IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
CC GO:0030684 preribosome IEP HCCA
CC GO:0032040 small-subunit processome IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0042274 ribosomal small subunit biogenesis IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR013719 RTT106/SPT16-like_middle_dom 832 917
IPR013953 FACT_Spt16 553 704
IPR000994 Pept_M24 199 431
IPR029148 FACT-Spt16_Nlobe 21 182
No external refs found!