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  5. Aob_g30277

Aob_g30277


Description : HYL1-interacting scaffold factor (CARP9) of miRNA biogenesis pathway & original description: none


Gene families : OG0002982 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002982_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aob_g30277
Cluster HCCA: Cluster_151

Target Alias Description ECC score Gene Family Method Actions
Adi_g117176 No alias HYL1-interacting scaffold factor (CARP9) of miRNA... 0.08 OrthoFinder output from all 47 species
Als_g20272 No alias HYL1-interacting scaffold factor (CARP9) of miRNA... 0.03 OrthoFinder output from all 47 species
Als_g20929 No alias HYL1-interacting scaffold factor (CARP9) of miRNA... 0.06 OrthoFinder output from all 47 species
Aspi01Gene06052.t1 Aspi01Gene06052 HYL1-interacting scaffold factor (CARP9) of miRNA... 0.03 OrthoFinder output from all 47 species
Aspi01Gene06055.t1 Aspi01Gene06055 HYL1-interacting scaffold factor (CARP9) of miRNA... 0.05 OrthoFinder output from all 47 species
Aspi01Gene06714.t1 Aspi01Gene06714 HYL1-interacting scaffold factor (CARP9) of miRNA... 0.03 OrthoFinder output from all 47 species
Ceric.05G022400.1 Ceric.05G022400 HYL1-interacting scaffold factor (CARP9) of miRNA... 0.06 OrthoFinder output from all 47 species
Dcu_g02053 No alias HYL1-interacting scaffold factor (CARP9) of miRNA... 0.07 OrthoFinder output from all 47 species
Ehy_g30845 No alias HYL1-interacting scaffold factor (CARP9) of miRNA... 0.03 OrthoFinder output from all 47 species
GSVIVT01016889001 No alias No description available 0.07 OrthoFinder output from all 47 species
LOC_Os03g08820.1 LOC_Os03g08820 no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
Lfl_g35901 No alias HYL1-interacting scaffold factor (CARP9) of miRNA... 0.07 OrthoFinder output from all 47 species
Mp2g06020.1 No alias no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
Msp_g27246 No alias HYL1-interacting scaffold factor (CARP9) of miRNA... 0.03 OrthoFinder output from all 47 species
Ore_g16143 No alias HYL1-interacting scaffold factor (CARP9) of miRNA... 0.04 OrthoFinder output from all 47 species
Pir_g48991 No alias HYL1-interacting scaffold factor (CARP9) of miRNA... 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0128.g021907 No alias HYL1-interacting scaffold factor (CARP9) of miRNA... 0.02 OrthoFinder output from all 47 species
Sam_g17297 No alias HYL1-interacting scaffold factor (CARP9) of miRNA... 0.02 OrthoFinder output from all 47 species
Sam_g51476 No alias HYL1-interacting scaffold factor (CARP9) of miRNA... 0.02 OrthoFinder output from all 47 species
Spa_g12857 No alias HYL1-interacting scaffold factor (CARP9) of miRNA... 0.03 OrthoFinder output from all 47 species
Spa_g47515 No alias HYL1-interacting scaffold factor (CARP9) of miRNA... 0.04 OrthoFinder output from all 47 species
Zm00001e000644_P002 Zm00001e000644 no hits & (original description: none) 0.07 OrthoFinder output from all 47 species
Zm00001e038842_P001 Zm00001e038842 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000413 protein peptidyl-prolyl isomerization IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0003916 DNA topoisomerase activity IEP HCCA
MF GO:0003917 DNA topoisomerase type I (single strand cut, ATP-independent) activity IEP HCCA
MF GO:0004402 histone acetyltransferase activity IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006265 DNA topological change IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0006473 protein acetylation IEP HCCA
BP GO:0006475 internal protein amino acid acetylation IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
MF GO:0008080 N-acetyltransferase activity IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
MF GO:0016407 acetyltransferase activity IEP HCCA
MF GO:0016410 N-acyltransferase activity IEP HCCA
BP GO:0016570 histone modification IEP HCCA
BP GO:0016573 histone acetylation IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016746 acyltransferase activity IEP HCCA
MF GO:0016747 acyltransferase activity, transferring groups other than amino-acyl groups IEP HCCA
MF GO:0016853 isomerase activity IEP HCCA
MF GO:0017069 snRNA binding IEP HCCA
MF GO:0017070 U6 snRNA binding IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018205 peptidyl-lysine modification IEP HCCA
BP GO:0018208 peptidyl-proline modification IEP HCCA
BP GO:0018393 internal peptidyl-lysine acetylation IEP HCCA
BP GO:0018394 peptidyl-lysine acetylation IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
MF GO:0034212 peptide N-acetyltransferase activity IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0043543 protein acylation IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
MF GO:0061733 peptide-lysine-N-acetyltransferase activity IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0071103 DNA conformation change IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR010844 Occludin_ELL 1340 1443
No external refs found!