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  5. Aob_g29513

Aob_g29513


Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aob_g29513
Cluster HCCA: Cluster_160

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00250660 OTP84,... Pentatricopeptide repeat-containing protein At3g57430,... 0.03 OrthoFinder output from all 47 species
AMTR_s00019p00110050 evm_27.TU.AmTr_v1... Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
Adi_g003870 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g024762 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g033331 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g036755 OTP84 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g036802 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g067305 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g067784 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g069125 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g074694 EMB2261 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g074695 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g098232 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g101211 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g102361 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g18491 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g22597 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g35854 REME1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g38174 No alias ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Als_g03812 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g10792 REME1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g16090 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g17854 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g18476 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g19266 VAC1, ECB2, ATECB2 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Als_g63751 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g11529 EMB2261 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g13913 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g21660 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g27291 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g27606 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g27910 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g28633 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g28679 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g28686 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g36310 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g36478 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g37339 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g37590 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g20705 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g38565 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene01789.t1 Aspi01Gene01789 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene03152.t1 Aspi01Gene03152 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene21870.t1 EMB2758, Aspi01Gene21870 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene36332.t2 Aspi01Gene36332 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene36735.t1 Aspi01Gene36735 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene38583.t1 PTAC9, OSB2,... ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene41783.t2 Aspi01Gene41783 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene43919.t1 OTP84, Aspi01Gene43919 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene51368.t2 CRR22, Aspi01Gene51368 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene51735.t1 Aspi01Gene51735 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene72589.t1 MEF22, Aspi01Gene72589 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0028.g023783 No alias not classified & original description: CDS=1-2922 0.03 OrthoFinder output from all 47 species
Cba_g06580 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g34432 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g34645 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.02G047700.1 Ceric.02G047700 not classified & original description: pacid=50586056... 0.03 OrthoFinder output from all 47 species
Ceric.09G007000.1 Ceric.09G007000 not classified & original description: pacid=50586983... 0.04 OrthoFinder output from all 47 species
Ceric.11G080200.1 Ceric.11G080200 not classified & original description: pacid=50595969... 0.04 OrthoFinder output from all 47 species
Ceric.12G030100.1 Ceric.12G030100 not classified & original description: pacid=50600629... 0.03 OrthoFinder output from all 47 species
Ceric.14G013000.1 Ceric.14G013000 not classified & original description: pacid=50634838... 0.04 OrthoFinder output from all 47 species
Ceric.18G000100.1 CRR22, Ceric.18G000100 ssDNA-binding protein *(OSB) & original description:... 0.02 OrthoFinder output from all 47 species
Ceric.32G058000.1 Ceric.32G058000 not classified & original description: pacid=50598467... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000342.38 No alias Pentatricopeptide repeat-containing protein At5g02860... 0.01 OrthoFinder output from all 47 species
Dac_g11806 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g15087 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g15088 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g18287 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g18577 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g22189 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g28445 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Dac_g32204 OSB3 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g50292 SLO1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g15835 CRR2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g26697 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
LOC_Os01g60430.1 LOC_Os01g60430 RNA editing factor (MEF10) 0.03 OrthoFinder output from all 47 species
LOC_Os08g13990.1 LOC_Os08g13990 Pentatricopeptide repeat-containing protein At2g37320... 0.03 OrthoFinder output from all 47 species
Len_g05399 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g18040 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g18261 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g26141 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g34131 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g45180 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Lfl_g04187 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g04986 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g05691 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g07132 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g07135 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g15292 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Mp5g04990.1 PTAC9, OSB2 ssDNA-binding protein (OSB). TAC9 cofactor of... 0.02 OrthoFinder output from all 47 species
Msp_g44934 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ore_g02370 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g26310 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g35296 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g35307 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g35308 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g36408 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g03426 OTP84 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g13457 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g15833 OTP82 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g57996 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g63512 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g63661 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g04460 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g15319 CRR2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g16657 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g22601 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pnu_g23094 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g23555 REME1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g26686 REME1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g06906 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g29483 OTP86 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g34591 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g46657 No alias ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g47516 OTP85 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g48495 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0003.g001529 SLO1 not classified & original description: CDS=1-1572 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0022.g008527 OTP84 borate transporter *(BOR) & original description: CDS=118-8541 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0037.g011866 No alias not classified & original description: CDS=1-2421 0.02 OrthoFinder output from all 47 species
Sam_g07175 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g19039 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g21956 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g37954 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g45851 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Smo16626 No alias Pentatricopeptide repeat-containing protein At4g16835,... 0.03 OrthoFinder output from all 47 species
Smo34484 No alias Pentatricopeptide repeat-containing protein At3g46790,... 0.04 OrthoFinder output from all 47 species
Smo98472 CRR22 Pentatricopeptide repeat-containing protein At2g13600... 0.04 OrthoFinder output from all 47 species
Solyc09g090440.1.1 LPA66, Solyc09g090440 Pentatricopeptide repeat-containing protein At5g66520... 0.03 OrthoFinder output from all 47 species
Tin_g06116 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g06658 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g16806 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g23117 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g29126 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g30551 No alias ssDNA-binding protein *(OSB) & original description: none 0.05 OrthoFinder output from all 47 species
Tin_g35082 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g35676 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g43907 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g45519 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g45880 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g46024 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000041 transition metal ion transport IEP HCCA
MF GO:0003678 DNA helicase activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0005381 iron ion transmembrane transporter activity IEP HCCA
MF GO:0005543 phospholipid binding IEP HCCA
BP GO:0006811 monoatomic ion transport IEP HCCA
BP GO:0006812 monoatomic cation transport IEP HCCA
BP GO:0006826 iron ion transport IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
MF GO:0008289 lipid binding IEP HCCA
MF GO:0008324 monoatomic cation transmembrane transporter activity IEP HCCA
MF GO:0015075 monoatomic ion transmembrane transporter activity IEP HCCA
MF GO:0015318 inorganic molecular entity transmembrane transporter activity IEP HCCA
MF GO:0022890 inorganic cation transmembrane transporter activity IEP HCCA
BP GO:0030001 metal ion transport IEP HCCA
CC GO:0033573 high-affinity iron permease complex IEP HCCA
BP GO:0034220 monoatomic ion transmembrane transport IEP HCCA
BP GO:0034755 iron ion transmembrane transport IEP HCCA
MF GO:0046873 metal ion transmembrane transporter activity IEP HCCA
MF GO:0046915 transition metal ion transmembrane transporter activity IEP HCCA
BP GO:0098655 monoatomic cation transmembrane transport IEP HCCA
BP GO:0098660 inorganic ion transmembrane transport IEP HCCA
BP GO:0098662 inorganic cation transmembrane transport IEP HCCA
CC GO:0098796 membrane protein complex IEP HCCA
CC GO:0098797 plasma membrane protein complex IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
CC GO:1902494 catalytic complex IEP HCCA
CC GO:1902495 transmembrane transporter complex IEP HCCA
CC GO:1905862 ferroxidase complex IEP HCCA
CC GO:1990204 oxidoreductase complex IEP HCCA
CC GO:1990351 transporter complex IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 426 472
IPR002885 Pentatricopeptide_repeat 527 575
IPR002885 Pentatricopeptide_repeat 223 272
IPR002885 Pentatricopeptide_repeat 22 70
IPR002885 Pentatricopeptide_repeat 122 163
IPR002885 Pentatricopeptide_repeat 325 373
IPR046848 E_motif 646 684
IPR002885 Pentatricopeptide_repeat 296 324
IPR002885 Pentatricopeptide_repeat 602 625
IPR002885 Pentatricopeptide_repeat 198 220
No external refs found!