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  5. Aob_g28684

Aob_g28684


Description : not classified & original description: none


Gene families : OG0000859 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000859_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aob_g28684
Cluster HCCA: Cluster_166

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00071p00110320 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.C3H zinc... 0.04 OrthoFinder output from all 47 species
AMTR_s00154p00086540 evm_27.TU.AmTr_v1... Zinc finger CCCH domain-containing protein 38... 0.03 OrthoFinder output from all 47 species
AT3G18640 No alias Zinc finger C-x8-C-x5-C-x3-H type family protein 0.02 OrthoFinder output from all 47 species
Ala_g33431 No alias component *(FES1) of FRI-C transcription effector... 0.03 OrthoFinder output from all 47 species
Als_g05138 No alias component *(FES1) of FRI-C transcription effector... 0.02 OrthoFinder output from all 47 species
Aspi01Gene04156.t1 Aspi01Gene04156 component *(FES1) of FRI-C transcription effector... 0.02 OrthoFinder output from all 47 species
Aspi01Gene71346.t1 Aspi01Gene71346 component *(FES1) of FRI-C transcription effector... 0.02 OrthoFinder output from all 47 species
Cba_g12381 No alias component *(FES1) of FRI-C transcription effector... 0.03 OrthoFinder output from all 47 species
Ceric.20G066500.1 Ceric.20G066500 component *(FES1) of FRI-C transcription effector... 0.02 OrthoFinder output from all 47 species
Ceric.29G050700.1 Ceric.29G050700 component *(FES1) of FRI-C transcription effector... 0.03 OrthoFinder output from all 47 species
Cre01.g003450 No alias No description available 0.02 OrthoFinder output from all 47 species
Dac_g13519 No alias component *(FES1) of FRI-C transcription effector... 0.03 OrthoFinder output from all 47 species
Dac_g39403 No alias component *(FES1) of FRI-C transcription effector... 0.03 OrthoFinder output from all 47 species
Dcu_g07178 No alias component *(FES1) of FRI-C transcription effector... 0.03 OrthoFinder output from all 47 species
Dde_g02390 No alias component *(FES1) of FRI-C transcription effector... 0.02 OrthoFinder output from all 47 species
Ehy_g26937 No alias component *(FES1) of FRI-C transcription effector... 0.02 OrthoFinder output from all 47 species
GSVIVT01010035001 ACCD RNA biosynthesis.transcriptional activation.C3H zinc... 0.03 OrthoFinder output from all 47 species
Gb_00875 No alias C3H zinc finger transcription factor 0.02 OrthoFinder output from all 47 species
Gb_19122 No alias C3H zinc finger transcription factor 0.03 OrthoFinder output from all 47 species
LOC_Os05g41790.1 LOC_Os05g41790 C3H zinc finger transcription factor 0.02 OrthoFinder output from all 47 species
LOC_Os08g04170.1 LOC_Os08g04170 C3H zinc finger transcription factor 0.03 OrthoFinder output from all 47 species
Len_g08104 No alias component *(FES1) of FRI-C transcription effector... 0.03 OrthoFinder output from all 47 species
MA_8408g0030 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Mp1g05400.1 No alias Zinc finger CCCH domain-containing protein 55 OS=Oryza... 0.03 OrthoFinder output from all 47 species
Nbi_g33981 No alias component *(FES1) of FRI-C transcription effector... 0.03 OrthoFinder output from all 47 species
Ore_g30501 No alias component *(FES1) of FRI-C transcription effector... 0.02 OrthoFinder output from all 47 species
Ore_g37073 No alias component *(FES1) of FRI-C transcription effector... 0.05 OrthoFinder output from all 47 species
Ppi_g11003 No alias component *(FES1) of FRI-C transcription effector... 0.03 OrthoFinder output from all 47 species
Solyc03g006350.3.1 FES1, Solyc03g006350 C3H zinc finger transcription factor 0.03 OrthoFinder output from all 47 species
Spa_g07473 No alias component *(FES1) of FRI-C transcription effector... 0.03 OrthoFinder output from all 47 species
Tin_g10851 No alias component *(FES1) of FRI-C transcription effector... 0.04 OrthoFinder output from all 47 species
Tin_g20286 No alias component *(FES1) of FRI-C transcription effector... 0.04 OrthoFinder output from all 47 species
Zm00001e040314_P001 Zm00001e040314 C3H zinc finger transcription factor 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
BP GO:0006396 RNA processing IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0005801 cis-Golgi network IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0008104 protein localization IEP HCCA
BP GO:0015031 protein transport IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0071705 nitrogen compound transport IEP HCCA
InterPro domains Description Start Stop
IPR000061 Surp 125 177
No external refs found!