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  5. Aob_g26103

Aob_g26103 (VIL1, VRN5)


Aliases : VIL1, VRN5

Description : PRC2-VRN-interacting factor (VIN3/VEL) of PRC2 histone methylation complex & original description: none


Gene families : OG0001143 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001143_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aob_g26103
Cluster HCCA: Cluster_187

Target Alias Description ECC score Gene Family Method Actions
AT4G30200 VEL1, VIL2 vernalization5/VIN3-like 0.02 OrthoFinder output from all 47 species
Als_g46672 VEL1, VIL2 PRC2-VRN-interacting factor (VIN3/VEL) of PRC2 histone... 0.02 OrthoFinder output from all 47 species
Aspi01Gene36527.t1 VIL1, VRN5,... PRC2-VRN-interacting factor (VIN3/VEL) of PRC2 histone... 0.03 OrthoFinder output from all 47 species
Dcu_g04934 VIL1, VRN5 PRC2-VRN-interacting factor (VIN3/VEL) of PRC2 histone... 0.03 OrthoFinder output from all 47 species
Dcu_g35623 VEL1, VIL2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g11907 VEL1, VIL2 PRC2-VRN-interacting factor (VIN3/VEL) of PRC2 histone... 0.03 OrthoFinder output from all 47 species
LOC_Os05g05310.2 VIL1, VRN5,... PRC2-VRN-interacting PHD protein (VIN3|VRN5) 0.03 OrthoFinder output from all 47 species
Lfl_g02158 VEL1, VIL2 PRC2-VRN-interacting factor (VIN3/VEL) of PRC2 histone... 0.02 OrthoFinder output from all 47 species
Ore_g13965 VEL1, VIL2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g17632 VEL1, VIL2 PRC2-VRN-interacting factor (VIN3/VEL) of PRC2 histone... 0.02 OrthoFinder output from all 47 species
Ore_g25574 VEL1, VIL2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g26834 VEL1, VIL2 PRC2-VRN-interacting factor (VIN3/VEL) of PRC2 histone... 0.03 OrthoFinder output from all 47 species
Spa_g02450 VIL1, VRN5 PRC2-VRN-interacting factor (VIN3/VEL) of PRC2 histone... 0.03 OrthoFinder output from all 47 species
Zm00001e018303_P001 VIL1, VRN5,... PRC2-VRN-interacting PHD protein (VIN3|VRN5) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003883 CTP synthase activity IEP HCCA
MF GO:0005216 monoatomic ion channel activity IEP HCCA
BP GO:0006220 pyrimidine nucleotide metabolic process IEP HCCA
BP GO:0006221 pyrimidine nucleotide biosynthetic process IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
BP GO:0009165 nucleotide biosynthetic process IEP HCCA
MF GO:0015276 ligand-gated monoatomic ion channel activity IEP HCCA
MF GO:0016879 ligase activity, forming carbon-nitrogen bonds IEP HCCA
MF GO:0022834 ligand-gated channel activity IEP HCCA
MF GO:0022836 gated channel activity IEP HCCA
MF GO:0022839 monoatomic ion gated channel activity IEP HCCA
MF GO:0030246 carbohydrate binding IEP HCCA
MF GO:0030247 polysaccharide binding IEP HCCA
BP GO:0072527 pyrimidine-containing compound metabolic process IEP HCCA
BP GO:0072528 pyrimidine-containing compound biosynthetic process IEP HCCA
BP GO:1901293 nucleoside phosphate biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR032881 Oberon_PHD 150 269
No external refs found!