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  5. Aob_g26053

Aob_g26053


Description : not classified & original description: none


Gene families : OG0000218 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000218_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aob_g26053
Cluster HCCA: Cluster_102

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00059p00097920 ATRD22, RD22,... BURP domain protein RD22 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
AMTR_s00087p00099700 evm_27.TU.AmTr_v1... No description available 0.02 OrthoFinder output from all 47 species
Aev_g12888 PG1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g36568 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g30870 USPL1, ATUSPL1 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Aspi01Gene60145.t2 Aspi01Gene60145 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.10G058900.1 ATRD22, RD22,... not classified & original description: pacid=50613459... 0.02 OrthoFinder output from all 47 species
Ceric.10G059100.1 ATRD22, RD22,... not classified & original description: pacid=50612935... 0.03 OrthoFinder output from all 47 species
Dde_g31047 PG2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g31393 PG1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01035703001 No alias BURP domain protein RD22 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
LOC_Os05g12400.1 LOC_Os05g12400 BURP domain-containing protein 1 OS=Oryza sativa subsp.... 0.03 OrthoFinder output from all 47 species
LOC_Os05g13490.1 LOC_Os05g13490 BURP domain-containing protein 8 OS=Oryza sativa subsp.... 0.03 OrthoFinder output from all 47 species
LOC_Os11g06980.1 ATRD22, RD22,... BURP domain-containing protein 17 OS=Oryza sativa subsp.... 0.04 OrthoFinder output from all 47 species
Len_g37163 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
MA_10428132g0010 ATRD22, RD22 BURP domain-containing protein 3 OS=Oryza sativa subsp.... 0.02 OrthoFinder output from all 47 species
MA_79669g0010 PG2 BURP domain-containing protein 16 OS=Oryza sativa subsp.... 0.03 OrthoFinder output from all 47 species
MA_8166396g0010 No alias BURP domain-containing protein 1 OS=Oryza sativa subsp.... 0.04 OrthoFinder output from all 47 species
MA_8888577g0010 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Ore_g04518 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g09461 PG1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g18674 JP630, PG3 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g35362 ATRD22, RD22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Smo229071 No alias Polygalacturonase non-catalytic subunit AroGP3... 0.05 OrthoFinder output from all 47 species
Smo229182 No alias Polygalacturonase non-catalytic subunit AroGP3... 0.04 OrthoFinder output from all 47 species
Solyc01g109470.3.1 USPL1, ATUSPL1,... BURP domain protein USPL1 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
Solyc05g005550.4.1 PG2, Solyc05g005550 non-catalytic polygalacturonase regulator 0.03 OrthoFinder output from all 47 species
Spa_g44636 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP HCCA
BP GO:0000398 mRNA splicing, via spliceosome IEP HCCA
CC GO:0005741 mitochondrial outer membrane IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
MF GO:0009678 pyrophosphate hydrolysis-driven proton transmembrane transporter activity IEP HCCA
MF GO:0015399 primary active transmembrane transporter activity IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0019829 ATPase-coupled monoatomic cation transmembrane transporter activity IEP HCCA
CC GO:0019867 outer membrane IEP HCCA
MF GO:0022853 active monoatomic ion transmembrane transporter activity IEP HCCA
CC GO:0031966 mitochondrial membrane IEP HCCA
CC GO:0031968 organelle outer membrane IEP HCCA
MF GO:0042625 ATPase-coupled ion transmembrane transporter activity IEP HCCA
MF GO:0042626 ATPase-coupled transmembrane transporter activity IEP HCCA
MF GO:0044769 ATPase activity, coupled to transmembrane movement of ions, rotational mechanism IEP HCCA
MF GO:0046961 proton-transporting ATPase activity, rotational mechanism IEP HCCA
CC GO:0098588 bounding membrane of organelle IEP HCCA
InterPro domains Description Start Stop
IPR004873 BURP_dom 176 386
No external refs found!